Os12g0238900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HGA6.
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Os12g0238900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HGA6.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 151.99 | 0.579 | 3.02 | 0.22 | 0.0814 | -0.691 | 0.00434 | -1.42 | 0.221 | 22.9 | 20.09 | 1245 | -- | -- |
| 155.3 | 0.58 | 2.98 | 0.469 | 0.088 | -0.447 | -0.101 | -- | 0.277 | 22.7 | 20.9 | 1159 | -- | -- |
| 151.98 | 0.574 | 3.01 | 0.217 | 0.0809 | -0.686 | -- | -1.42 | 0.219 | 23 | 20.1 | 1260 | -- | -- |
| 154.72 | 0.579 | 2.97 | 0.367 | 0.1 | -0.42 | -- | -- | 0.303 | 22.5 | 24 | 2195 | -- | -- |
| 152.36 | 0.575 | 3.01 | 0.213 | -- | -0.666 | -- | -1.4 | 0.22 | -- | 20.16 | 1260 | -- | -- |
| 160.41 | 0.594 | 3 | 0.247 | 0.022 | -- | -0.232 | -- | 0.168 | 2.07 | -- | -- | -- | -- |
| 160.51 | 0.593 | 3 | 0.254 | 0.0486 | -- | -- | -- | 0.17 | 21.5 | -- | -- | -- | -- |
| 155.05 | 0.58 | 2.96 | 0.432 | -- | -0.391 | -- | -- | 0.341 | -- | 23 | 3017 | -- | -- |
| 158.72 | 0.587 | 2.98 | -- | 0.0891 | -0.293 | -- | -- | 0.238 | 22.3 | 23.93 | 2316 | -- | -- |
| 160.64 | 0.592 | 3 | 0.254 | -- | -- | -- | -- | 0.17 | -- | -- | -- | -- | -- |
| 162.21 | 0.596 | 3 | -- | 0.0492 | -- | -- | -- | 0.142 | 21.9 | -- | -- | -- | -- |
| 158.67 | 0.587 | 2.98 | -- | -- | -0.275 | -- | -- | 0.245 | -- | 23.92 | 1419 | -- | -- |
| 162.35 | 0.595 | 3 | -- | -- | -- | -- | -- | 0.142 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 141.67 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 3 |
| 2 | 142.22 | temperature | 25 | 30 | < th | dose dependent | rect. | 6 | 5 |
| 3 | 142.25 | temperature | 20 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 12 | 142.85 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 9 |
| 21 | 143.28 | humidity | 80 | 270 | < th | dose independent | rect. | 6 | 1 |
| 22 | 143.47 | humidity | 80 | 270 | < th | dose dependent | rect. | 6 | 1 |
| 24 | 143.73 | temperature | 20 | 90 | < th | dose independent | rect. | 7 | 12 |
| 25 | 143.79 | temperature | 20 | 90 | < th | dose independent | rect. | 7 | 2 |
| 42 | 143.97 | wind | 5 | 10 | > th | dose independent | rect. | 8 | 1 |
| 53 | 143.97 | wind | 5 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 189 | 145.44 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 198 | 145.78 | humidity | 80 | 270 | < th | dose independent | rect. | 4 | 4 |
| 209 | 146.25 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 15 |
| 216 | 146.46 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 229 | 146.72 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 269 | 147.42 | wind | 5 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 274 | 147.66 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 278 | 147.74 | wind | 5 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 281 | 147.75 | humidity | 50 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 290 | 147.86 | humidity | 80 | 4320 | > th | dose independent | rect. | 3 | 5 |
| 294 | 147.94 | wind | 3 | 4320 | > th | dose dependent | rect. | 19 | 2 |
| 295 | 147.94 | humidity | 50 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 303 | 148.05 | humidity | 80 | 1440 | < th | dose independent | rect. | 22 | 11 |
| 307 | 148.10 | humidity | 80 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 318 | 148.15 | wind | 3 | 270 | > th | dose dependent | rect. | 5 | 2 |
| 348 | 148.42 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 367 | 148.52 | humidity | 90 | 1440 | < th | dose dependent | rect. | 23 | 7 |
| 391 | 148.67 | wind | 3 | 270 | > th | dose independent | rect. | 5 | 2 |
| 392 | 148.68 | temperature | 20 | 270 | < th | dose independent | sin | 0 | NA |
| 394 | 148.69 | temperature | 20 | 270 | > th | dose independent | sin | 0 | NA |
| 459 | 149.11 | temperature | 25 | 30 | < th | dose dependent | sin | 23 | NA |
| 478 | 149.18 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 8 |
| 481 | 149.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 22 |
| 486 | 149.22 | radiation | 20 | 10 | < th | dose independent | rect. | 7 | 4 |
| 504 | 149.28 | humidity | 80 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 518 | 149.34 | radiation | 20 | 10 | < th | dose independent | rect. | 7 | 10 |
| 520 | 149.36 | humidity | 70 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 529 | 149.41 | radiation | 20 | 10 | < th | dose independent | rect. | 7 | 20 |
| 541 | 149.46 | radiation | 20 | 10 | < th | dose independent | rect. | 7 | 7 |
| 557 | 149.52 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 580 | 149.59 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 602 | 149.71 | humidity | 70 | 270 | < th | dose dependent | rect. | 17 | 2 |
| 609 | 149.75 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 7 | 2 |
| 664 | 149.96 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 671 | 149.99 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 9 |
| 708 | 150.07 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 718 | 150.10 | temperature | 10 | 90 | > th | dose dependent | rect. | 9 | 22 |
| 747 | 150.17 | temperature | 25 | 10 | < th | dose independent | rect. | 13 | 22 |
| 749 | 150.17 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 7 | 3 |
| 851 | 150.44 | wind | 5 | 4320 | > th | dose dependent | rect. | 18 | 7 |
| 855 | 150.45 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 9 |
| 915 | 150.55 | radiation | 20 | 10 | < th | dose independent | rect. | 7 | 17 |
| 927 | 150.57 | wind | 9 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 974 | 150.66 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 7 | 2 |
| 976 | 150.66 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 16 |