Os12g0228900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, ribonuclease inhibitor subtype containing protein.
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Os12g0228900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, ribonuclease inhibitor subtype containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.56 | 0.35 | 9.76 | -1.59 | 0.173 | 0.553 | 0.627 | -0.613 | -2.09 | 2.05 | 20.8 | 1231 | -- | -- |
| 56.35 | 0.35 | 9.75 | -1.47 | 0.186 | 0.604 | 0.561 | -- | -2.08 | 2.06 | 21.2 | 1326 | -- | -- |
| 56.77 | 0.351 | 9.75 | -1.58 | 0.202 | 0.527 | -- | -0.531 | -2.1 | 3.11 | 20.99 | 1304 | -- | -- |
| 57.24 | 0.352 | 9.74 | -1.46 | 0.197 | 0.584 | -- | -- | -2.08 | 3.1 | 21.29 | 1320 | -- | -- |
| 58.82 | 0.357 | 9.76 | -1.6 | -- | 0.574 | -- | -0.518 | -2.1 | -- | 20.8 | 1212 | -- | -- |
| 66.11 | 0.381 | 9.71 | -1.21 | 0.224 | -- | 0.452 | -- | -1.92 | 2.22 | -- | -- | -- | -- |
| 66.76 | 0.383 | 9.71 | -1.22 | 0.233 | -- | -- | -- | -1.92 | 2.94 | -- | -- | -- | -- |
| 59.27 | 0.359 | 9.74 | -1.49 | -- | 0.654 | -- | -- | -2.08 | -- | 20.7 | 1209 | -- | -- |
| 85.21 | 0.43 | 9.65 | -- | 0.256 | -0.724 | -- | -- | -1.6 | 3.89 | 18.49 | 47520 | -- | -- |
| 69.88 | 0.391 | 9.71 | -1.21 | -- | -- | -- | -- | -1.91 | -- | -- | -- | -- | -- |
| 106.21 | 0.482 | 9.68 | -- | 0.209 | -- | -- | -- | -1.78 | 2.91 | -- | -- | -- | -- |
| 86.04 | 0.432 | 9.62 | -- | -- | -0.698 | -- | -- | -1.53 | -- | 22 | 47520 | -- | -- |
| 108.72 | 0.487 | 9.67 | -- | -- | -- | -- | -- | -1.78 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 3 | 54.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 34 | 54.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 47 | 54.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 86 | 54.67 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 110 | 54.75 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 142 | 54.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 149 | 54.93 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 172 | 55.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 204 | 55.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 209 | 55.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 6 |
| 288 | 55.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 358 | 55.42 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 364 | 55.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 530 | 55.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 620 | 55.78 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 746 | 55.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 21 |
| 854 | 56.09 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 971 | 56.22 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |