BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0228900 Os12g0228900|AK103549
(304 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G20210.1 | chr2:8721606-8725042 REVERSE LENGTH=605 191 4e-49
AT1G10510.1 | chr1:3461771-3465590 FORWARD LENGTH=606 49 3e-06
>AT2G20210.1 | chr2:8721606-8725042 REVERSE LENGTH=605
Length = 604
Score = 191 bits (485), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 126/305 (41%), Positives = 178/305 (58%), Gaps = 12/305 (3%)
Query: 5 FAKIIVHTLLGSSSGIRTLEISENNIAGWLKTMDKRFACFS--SAXXXXXXXXXXXXXXX 62
FA+++ TLL SSS + +L++SENNI+GWL T F+C S +
Sbjct: 307 FARMVFSTLLDSSSNLSSLDLSENNISGWLST----FSCKSVVGSLSSGKSLQSLCKLNL 362
Query: 63 XXXXXXKGDIEDLCKILVKMPNLRDLDISDNPIMDEGIRLLICFISRTLRKEKSLSRLRA 122
+ D E+L L+ MP L LD+S NPI D GIR LI + ++ + L+ L
Sbjct: 363 RGNELDRYDAENLAHALLHMPGLESLDLSGNPIEDSGIRSLISYFTKN--PDSRLADLNL 420
Query: 123 ENCDLTNIGVTELLECLSSVSEPLNLLSIADNHLGSSVAVALAKFLGSGVRELNIEDIGF 182
ENC+L+ GV E L+ LS + +PL LS+ADN LGS VA A+ + LNI IG
Sbjct: 421 ENCELSCCGVIEFLDTLSMLEKPLKFLSVADNALGSEVAEAVVNSFTISIESLNIMGIGL 480
Query: 183 GPLGFQILEEAL-PADVALSHINVSKNRGGIRAARFVSRLIKQAPGLVSVNAGSNLLPPE 241
GPLGF L L L IN+SKNRGG+ ARF+S+LI AP L+S++A NL+PPE
Sbjct: 481 GPLGFLALGRKLEKVSKKLLSINISKNRGGLETARFLSKLIPLAPKLISIDASYNLMPPE 540
Query: 242 SMEVICDVLKQKNTCNLERLDLMGNMHLSDAAFPAAL--EFRKHGKQILIVPSQPGACAP 299
++ ++CD L+ +L+RLD+ GN +S A ++L EF+ +G+ I ++PS + P
Sbjct: 541 ALLMLCDSLRTAKG-DLKRLDMTGNSCISHEADHSSLLHEFQHNGEPIFVLPSSSVSHVP 599
Query: 300 YDDDP 304
YDDDP
Sbjct: 600 YDDDP 604
>AT1G10510.1 | chr1:3461771-3465590 FORWARD LENGTH=606
Length = 605
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 38/213 (17%)
Query: 85 LRDLDISDNPIMDEGIRLLICFISRTLRKEKSLSRLRAENCDLTNIGVTELLECLSSVSE 144
L+ L++S NPI DEG + L TL + S+ L+ + D+ + G E+ E L S
Sbjct: 228 LKILNLSGNPIGDEGAKTLCA----TLMENSSIEILQLNSTDIGDEGAKEIAELLKRNS- 282
Query: 145 PLNLLSIADNHLGSSVAVALAKFL--GSGVRELNIEDIGFGPLGFQILEEALPADVALSH 202
L ++ + +N + S +LA L + +R L++ G LG L + L + +L
Sbjct: 283 TLRIIELNNNMIDYSGFTSLAGALLENNTIRNLHLNGNYGGALGANALAKGLEGNKSLRE 342
Query: 203 INVSKNRGG-----------------------------IRAARFVSRLIKQAPGLVSVNA 233
+++ N G + A +V+ IK++ LV +N
Sbjct: 343 LHLHGNSIGDEGTRALMAGLSSHKGKVALLDLGNNSISAKGAFYVAEYIKRSKSLVWLNL 402
Query: 234 GSNLLPPESMEVICDVLKQKNTCNLERLDLMGN 266
N + E E I D LKQ + + +DL GN
Sbjct: 403 YMNDIGDEGAEKIADSLKQNRS--IATIDLGGN 433
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,987,568
Number of extensions: 222961
Number of successful extensions: 830
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 828
Number of HSP's successfully gapped: 2
Length of query: 304
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 206
Effective length of database: 8,419,801
Effective search space: 1734479006
Effective search space used: 1734479006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)