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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0204100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Major intrinsic protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0158) R2 : 0.0188
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0985 (0.0333) R2dN8 : 0.0243 R2N8 : 0.0188
σ : 0.298
deviance : 40.73
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.49 0.295 2.98 -0.0838 0.0483 0.798 0.247 -4.47 -0.0918 6.03 998.4 1690 -- --
39.5 0.293 2.97 0.0212 0.0454 0.577 0.278 -- -0.0917 5.33 994.6 1879 -- --
39.62 0.293 2.98 -0.072 0.0538 0.877 -- -4.93 -0.0916 7.33 997.5 1723 -- --
39.63 0.293 2.97 0.0185 0.0525 0.559 -- -- -0.0914 7.6 994.9 2521 -- --
39.77 0.294 2.98 -0.0751 -- 0.797 -- -4.43 -0.0914 -- 998.2 1702 -- --
40.44 0.298 2.97 -0.00218 0.0449 -- 0.269 -- -0.0984 5.64 -- -- -- --
40.54 0.298 2.97 0.000104 0.0579 -- -- -- -0.0991 8.01 -- -- -- --
39.78 0.294 2.97 0.0197 -- 0.567 -- -- -0.0906 -- 994.9 2512 -- --
39.63 0.293 2.97 -- 0.0533 0.553 -- -- -0.0936 7.25 995 2464 -- --
40.73 0.298 2.97 0.000664 -- -- -- -- -0.0984 -- -- -- -- --
40.54 0.298 2.97 -- 0.0579 -- -- -- -0.0991 8.01 -- -- -- --
39.79 0.294 2.97 -- -- 0.559 -- -- -0.0927 -- 994.9 2092 -- --
40.73 0.298 2.97 -- -- -- -- -- -0.0985 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.07 temperature 25 10 > th dose dependent rect. 5 1
3 33.83 temperature 25 10 > th dose independent rect. 5 1
8 36.44 temperature 25 10 > th dose independent rect. 2 4
11 36.58 radiation 1 30 > th dose dependent rect. 5 1
48 37.10 temperature 25 10 > th dose dependent rect. 2 4
54 37.89 atmosphere 995 4320 > th dose independent rect. 5 1
89 38.65 temperature 25 10 > th dose independent rect. 22 8
91 38.70 wind 7 1440 < th dose independent rect. 5 1
93 38.70 temperature 10 1440 > th dose independent rect. 5 1
96 38.70 temperature 30 1440 < th dose independent rect. 5 1
100 38.70 humidity 50 1440 > th dose independent rect. 5 1
110 38.70 atmosphere 1015 1440 < th dose independent rect. 5 1
111 38.70 radiation 20 1440 < th dose independent rect. 5 1
120 38.70 temperature 10 1440 > th dose independent rect. 6 23
123 38.72 radiation 1 90 > th dose independent rect. 5 1
152 38.98 atmosphere 995 4320 > th dose independent rect. 23 1
159 39.10 temperature 25 10 > th dose independent rect. 20 10
175 39.20 radiation 10 10 < th dose dependent sin 10 NA
180 39.28 atmosphere 995 4320 > th dose independent rect. 19 11
182 39.29 atmosphere 995 4320 > th dose independent rect. 5 6
192 39.33 atmosphere 1005 90 > th dose independent rect. 5 1
196 39.35 humidity 90 90 > th dose independent rect. 5 1
211 39.35 atmosphere 995 4320 > th dose independent rect. 19 16
224 39.37 radiation 30 1440 > th dose independent rect. 16 1
245 39.39 atmosphere 995 4320 > th dose independent rect. 2 4
246 39.39 atmosphere 995 4320 > th dose independent rect. 2 9
248 39.39 atmosphere 995 4320 > th dose independent rect. 19 14
250 39.40 wind 9 4320 < th dose independent rect. 23 1
254 39.40 humidity 90 90 > th dose dependent rect. 5 1
255 39.40 radiation 30 1440 > th dose dependent rect. 16 1
278 39.41 wind 3 90 < th dose dependent rect. 5 1
281 39.42 atmosphere 995 4320 > th dose independent rect. 19 5
283 39.43 temperature 25 10 > th dose independent sin 8 NA
298 39.44 radiation 10 10 < th dose dependent rect. 23 12
310 39.46 atmosphere 995 4320 > th dose independent rect. 23 12
314 39.47 radiation 1 30 > th dose independent sin 8 NA
315 39.47 atmosphere 1000 1440 > th dose independent rect. 20 1
321 39.47 atmosphere 1000 1440 < th dose dependent rect. 12 1
325 39.48 wind 9 4320 > th dose independent rect. 23 1
327 39.48 atmosphere 995 4320 < th dose independent rect. 1 1
332 39.48 atmosphere 1000 1440 < th dose independent rect. 12 1
333 39.48 atmosphere 995 4320 < th dose independent rect. 21 1
481 39.48 wind 9 4320 > th dose dependent rect. 23 1
482 39.48 atmosphere 995 4320 < th dose dependent rect. 1 1
487 39.48 atmosphere 995 4320 < th dose dependent rect. 21 1
665 39.50 radiation 10 10 < th dose dependent rect. 23 9
685 39.52 radiation 1 30 < th dose independent sin 8 NA
693 39.52 radiation 40 1440 < th dose independent rect. 16 10
747 39.54 atmosphere 995 4320 > th dose independent rect. 19 8
750 39.54 atmosphere 995 4320 < th dose dependent sin 8 NA
751 39.54 atmosphere 1000 1440 < th dose dependent sin 20 NA
803 39.55 atmosphere 1000 1440 > th dose independent rect. 12 1
805 39.55 radiation 1 30 < th dose independent rect. 23 9
811 39.55 radiation 40 1440 < th dose independent rect. 16 14
815 39.55 atmosphere 1000 1440 < th dose dependent sin 18 NA
875 39.56 radiation 10 10 < th dose dependent rect. 21 14
924 39.57 atmosphere 1000 1440 < th dose dependent rect. 18 1
978 39.58 wind 1 720 < th dose independent rect. 4 1
990 39.58 atmosphere 1000 1440 < th dose dependent no NA NA