Os12g0194700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA-directed RNA polymerase, 13 to 16 kDa subunit family protein.
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Os12g0194700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA-directed RNA polymerase, 13 to 16 kDa subunit family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.04 | 0.21 | 10 | -0.18 | 0.0189 | 1.03 | -0.298 | -1.09 | -0.102 | 21.4 | 17.22 | 656 | -- | -- |
| 20.79 | 0.212 | 10 | 0.022 | 0.0312 | 1.05 | -0.482 | -- | -0.0406 | 20.8 | 16.04 | 665 | -- | -- |
| 20.03 | 0.208 | 10.1 | -0.237 | 0.14 | 0.943 | -- | -1.35 | -0.126 | 17 | 17.68 | 840 | -- | -- |
| 21.43 | 0.216 | 10 | 0.0493 | 0.155 | 0.956 | -- | -- | -0.0247 | 17.1 | 16.5 | 851 | -- | -- |
| 20.33 | 0.21 | 10.1 | -0.222 | -- | 1.02 | -- | -1.4 | -0.126 | -- | 17.68 | 671 | -- | -- |
| 36.22 | 0.282 | 9.99 | 0.304 | 0.314 | -- | -0.386 | -- | 0.13 | 19.9 | -- | -- | -- | -- |
| 36.65 | 0.283 | 9.99 | 0.315 | 0.315 | -- | -- | -- | 0.13 | 19.8 | -- | -- | -- | -- |
| 21.75 | 0.217 | 10 | 0.0345 | -- | 1.13 | -- | -- | -0.0453 | -- | 14.94 | 663 | -- | -- |
| 21.41 | 0.215 | 10 | -- | 0.189 | 1.01 | -- | -- | -0.0221 | 17.1 | 15.71 | 885 | -- | -- |
| 42.03 | 0.303 | 9.98 | 0.312 | -- | -- | -- | -- | 0.125 | -- | -- | -- | -- | -- |
| 39.27 | 0.293 | 10 | -- | 0.313 | -- | -- | -- | 0.0948 | 19.8 | -- | -- | -- | -- |
| 21.78 | 0.217 | 10 | -- | -- | 1.14 | -- | -- | -0.0507 | -- | 14.8 | 666 | -- | -- |
| 44.59 | 0.312 | 9.99 | -- | -- | -- | -- | -- | 0.0909 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 27 | 20.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 28 | 20.26 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 34 | 20.27 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 41 | 20.33 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 47 | 20.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 49 | 20.38 | temperature | 15 | 1440 | > th | dose dependent | rect. | 13 | 17 |
| 53 | 20.39 | temperature | 15 | 1440 | > th | dose dependent | rect. | 14 | 15 |
| 59 | 20.40 | temperature | 15 | 1440 | > th | dose dependent | rect. | 14 | 13 |
| 66 | 20.41 | temperature | 15 | 1440 | > th | dose dependent | sin | 15 | NA |
| 126 | 20.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 7 |
| 128 | 20.46 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 9 |
| 146 | 20.47 | temperature | 30 | 1440 | < th | dose dependent | sin | 16 | NA |
| 147 | 20.47 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 11 |
| 156 | 20.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 20 |
| 211 | 20.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 18 |
| 334 | 20.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 22 |
| 508 | 20.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 22 |
| 529 | 20.61 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 21 |
| 545 | 20.61 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 688 | 20.66 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |