BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0194700 Os12g0194700|AK121912
         (108 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G29540.3  | chr2:12643288-12643828 FORWARD LENGTH=140           79   3e-16
AT3G52090.2  | chr3:19318069-19318998 REVERSE LENGTH=147           52   9e-08

>AT2G29540.3 | chr2:12643288-12643828 FORWARD LENGTH=140
          Length = 139

 Score = 79.3 bits (194), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 45/59 (76%)

Query: 35  PRVAFCGYSIPHPADNKVNIRVQTTGDPAKDVLKDSLQDLMVMCQHVRGTFDTAVTQFR 93
           PRV    Y+IPHP+  +VNIRVQTTGDPA++V KD+ Q+LM M +HVR  FD AV +++
Sbjct: 52  PRVTVAAYTIPHPSLEQVNIRVQTTGDPAREVFKDACQELMQMNRHVRSVFDKAVAEYK 110



>AT3G52090.2 | chr3:19318069-19318998 REVERSE LENGTH=147
          Length = 146

 Score = 51.6 bits (122), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 15/84 (17%)

Query: 11 ASTFSIVEEDHTLANSVRFVLNQDPRVAFCGYSIPHPADNKVNIRVQTTGDPAKDVLKDS 70
          A++F++  EDHT+ N VR  L++D  V F GY +PHP   K+ +R     DP     KD 
Sbjct: 30 AASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVR-----DP-----KDW 79

Query: 71 LQDLMVMCQHVRGTFDTA-VTQFR 93
           ++L V    V G  +T  ++ F+
Sbjct: 80 FRNLKV----VYGCLETVNISWFK 99



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,376,234
Number of extensions: 85817
Number of successful extensions: 175
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 2
Length of query: 108
Length of database: 11,106,569
Length adjustment: 77
Effective length of query: 31
Effective length of database: 8,995,537
Effective search space: 278861647
Effective search space used: 278861647
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)