Os12g0192500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phosphomethylpyrimidine kinase type-2 domain containing protein.
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Os12g0192500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phosphomethylpyrimidine kinase type-2 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.7 | 0.229 | 9.59 | -0.783 | 0.12 | 0.546 | -0.166 | -0.114 | -0.405 | 2 | 24.39 | 254 | -- | -- |
| 23.71 | 0.227 | 9.59 | -0.767 | 0.12 | 0.537 | -0.154 | -- | -0.401 | 1.85 | 24.4 | 243 | -- | -- |
| 23.8 | 0.227 | 9.59 | -0.76 | 0.127 | 0.543 | -- | 0.0279 | -0.399 | 1.94 | 24.4 | 233 | -- | -- |
| 23.79 | 0.227 | 9.59 | -0.762 | 0.125 | 0.549 | -- | -- | -0.4 | 2.11 | 24.39 | 242 | -- | -- |
| 24.36 | 0.23 | 9.58 | -0.716 | -- | 0.446 | -- | 0.216 | -0.384 | -- | 24.4 | 328 | -- | -- |
| 28.91 | 0.252 | 9.58 | -0.666 | 0.172 | -- | 0.151 | -- | -0.345 | 18.3 | -- | -- | -- | -- |
| 28.95 | 0.252 | 9.58 | -0.668 | 0.173 | -- | -- | -- | -0.345 | 18.6 | -- | -- | -- | -- |
| 24.38 | 0.23 | 9.59 | -0.748 | -- | 0.461 | -- | -- | -0.391 | -- | 24.4 | 331 | -- | -- |
| 38.54 | 0.289 | 9.57 | -- | 0.08 | 0.375 | -- | -- | -0.291 | 24 | 25.23 | 243 | -- | -- |
| 30.52 | 0.258 | 9.58 | -0.672 | -- | -- | -- | -- | -0.348 | -- | -- | -- | -- | -- |
| 40.72 | 0.299 | 9.57 | -- | 0.182 | -- | -- | -- | -0.27 | 18.4 | -- | -- | -- | -- |
| 38.7 | 0.29 | 9.57 | -- | -- | 0.36 | -- | -- | -0.292 | -- | 25 | 306 | -- | -- |
| 42.45 | 0.304 | 9.56 | -- | -- | -- | -- | -- | -0.274 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 10 |
| 7 | 22.77 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 39 | 23.01 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 42 | 23.03 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 68 | 23.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 7 |
| 71 | 23.19 | temperature | 30 | 14400 | < th | dose independent | rect. | 20 | 13 |
| 74 | 23.20 | temperature | 30 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 76 | 23.21 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 84 | 23.22 | temperature | 30 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 89 | 23.23 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 116 | 23.43 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 145 | 23.58 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 157 | 23.64 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 13 |
| 166 | 23.66 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 170 | 23.66 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 13 |
| 175 | 23.67 | temperature | 30 | 720 | < th | dose dependent | sin | 2 | NA |
| 190 | 23.71 | temperature | 10 | 720 | > th | dose dependent | sin | 3 | NA |
| 232 | 23.78 | temperature | 25 | 720 | > th | dose independent | rect. | 2 | 13 |
| 243 | 23.79 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 247 | 23.80 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 265 | 23.81 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 278 | 23.82 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 283 | 23.83 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 17 |
| 332 | 23.89 | temperature | 25 | 720 | < th | dose independent | sin | 4 | NA |
| 341 | 23.89 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 371 | 23.93 | temperature | 25 | 720 | > th | dose independent | sin | 4 | NA |
| 400 | 23.95 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 625 | 24.14 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 7 |
| 719 | 24.21 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 6 |
| 842 | 24.28 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 925 | 24.35 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 4 |