BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0192500 Os12g0192500|AK066087
         (548 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G22940.1  | chr1:8122384-8124908 FORWARD LENGTH=523            688   0.0  

>AT1G22940.1 | chr1:8122384-8124908 FORWARD LENGTH=523
          Length = 522

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/492 (68%), Positives = 401/492 (81%), Gaps = 3/492 (0%)

Query: 57  PHVLTVAGSDSGGGAGIQADIKACAALGAYCSSVVTAVTAQNTAGVQGIHVVPEEFIREQ 116
           P VLTVAGSDSG GAGIQAD+K CAA G YC+SV+TAVTAQNT GVQ +H++P EFI EQ
Sbjct: 31  PQVLTVAGSDSGAGAGIQADLKVCAARGVYCASVITAVTAQNTRGVQSVHLLPPEFISEQ 90

Query: 117 LNSVLSDMSVDVVKTGMLPSIGVVRVLCESLKKFPVKALVVDPVMVSTSGDTLSESSTLS 176
           L SVLSD   DVVKTGMLPS  +V VL ++L  FPV+ALVVDPVMVSTSG  L+ SS LS
Sbjct: 91  LKSVLSDFEFDVVKTGMLPSTEIVEVLLQNLSDFPVRALVVDPVMVSTSGHVLAGSSILS 150

Query: 177 VYRDELFAMADIVTPNVKEASRLLGGVSLRTVSDMRNAAESIYKFGPKHVLVKGGDMLES 236
           ++R+ L  +ADI+TPNVKEAS LL G  + TV++MR+AA+S+++ GP+ VLVKGGD+ +S
Sbjct: 151 IFRERLLPIADIITPNVKEASALLDGFRIETVAEMRSAAKSLHEMGPRFVLVKGGDLPDS 210

Query: 237 SDATDVFFDGKEFIELHAHRIKTHNTHGTGCTLASCIASELAKGATMLHAVQVAKNFVES 296
           SD+ DV+FDGKEF EL + RI T NTHGTGCTLASCIA+ELAKG++ML AV+VAK FV++
Sbjct: 211 SDSVDVYFDGKEFHELRSPRIATRNTHGTGCTLASCIAAELAKGSSMLSAVKVAKRFVDN 270

Query: 297 ALHHSKDLVVGNGPQGPFDHLFKLKCPPYNVGSQPS-FKPDQLFLYAVTDSGMNKKWGRS 355
           AL +SKD+V+G+G QGPFDH F LK  P +  S+ S F PD LFLYAVTDS MNKKW RS
Sbjct: 271 ALDYSKDIVIGSGMQGPFDHFFGLKKDPQS--SRCSIFNPDDLFLYAVTDSRMNKKWNRS 328

Query: 356 IKEAVQAAIEGGATIVQLREKDSETREFLEAAKACMEICKSSGVPLLINDRVDIALACNA 415
           I +A++AAIEGGATI+QLREK++ETREFLE AKAC++IC+S GV LLINDR+DIALAC+A
Sbjct: 329 IVDALKAAIEGGATIIQLREKEAETREFLEEAKACIDICRSHGVSLLINDRIDIALACDA 388

Query: 416 DGVHVGQLDMSAHEVRELLGPGKIIGVSCKTPAQAQQAWNDGADYIGCGGVFPTSTKANN 475
           DGVHVGQ DM    VR LLGP KIIGVSCKTP QA QAW DGADYIG GGVFPT+TKANN
Sbjct: 389 DGVHVGQSDMPVDLVRSLLGPDKIIGVSCKTPEQAHQAWKDGADYIGSGGVFPTNTKANN 448

Query: 476 PTLGFDGLKTVCLASKLPVVAIGGINASNAGSVMELGLPNLKGVAVVSALFDRPSVVAET 535
            T+G DGLK VC ASKLPVVAIGGI  SNAGSVM++  PNLKGVAVVSALFD+  V+ + 
Sbjct: 449 RTIGLDGLKEVCEASKLPVVAIGGIGISNAGSVMQIDAPNLKGVAVVSALFDQDCVLTQA 508

Query: 536 RNMKSILTNTSR 547
           + +   L  + R
Sbjct: 509 KKLHKTLKESKR 520



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.131    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,672,941
Number of extensions: 437961
Number of successful extensions: 994
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 995
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 445
Effective length of database: 8,282,721
Effective search space: 3685810845
Effective search space used: 3685810845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)