Os12g0182800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0182800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.97 | 0.319 | 8.66 | 0.452 | 0.345 | -1.09 | -0.0344 | 1.51 | 0.115 | 2.84 | 24.37 | 1406 | -- | -- |
| 45.39 | 0.314 | 8.65 | 0.179 | 0.327 | -0.99 | -0.0187 | -- | 0.249 | 2.88 | 22.36 | 8453 | -- | -- |
| 45.92 | 0.316 | 8.65 | 0.484 | 0.368 | -1.11 | -- | 1.55 | 0.138 | 2.8 | 24.06 | 1365 | -- | -- |
| 45.38 | 0.314 | 8.66 | 0.169 | 0.325 | -0.995 | -- | -- | 0.243 | 2.86 | 22.46 | 8449 | -- | -- |
| 50.09 | 0.33 | 8.66 | 0.401 | -- | -1.12 | -- | 1.2 | 0.154 | -- | 23.49 | 1676 | -- | -- |
| 81.25 | 0.423 | 8.74 | -0.308 | 0.247 | -- | -0.138 | -- | -0.144 | 3.04 | -- | -- | -- | -- |
| 81.31 | 0.422 | 8.74 | -0.305 | 0.246 | -- | -- | -- | -0.143 | 3.06 | -- | -- | -- | -- |
| 50.53 | 0.331 | 8.66 | 0.186 | -- | -1 | -- | -- | 0.217 | -- | 21.93 | 7707 | -- | -- |
| 45.84 | 0.315 | 8.67 | -- | 0.329 | -0.933 | -- | -- | 0.194 | 2.83 | 23.5 | 8416 | -- | -- |
| 84.78 | 0.43 | 8.74 | -0.294 | -- | -- | -- | -- | -0.137 | -- | -- | -- | -- | -- |
| 83.76 | 0.428 | 8.74 | -- | 0.24 | -- | -- | -- | -0.11 | 3.06 | -- | -- | -- | -- |
| 50.75 | 0.332 | 8.67 | -- | -- | -0.944 | -- | -- | 0.201 | -- | 24.6 | 9031 | -- | -- |
| 87.06 | 0.436 | 8.74 | -- | -- | -- | -- | -- | -0.104 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 16 |
| 2 | 46.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 4 | 19 |
| 5 | 46.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 22 |
| 10 | 46.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 48 | 46.31 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 22 |
| 51 | 46.32 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 67 | 46.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 89 | 46.37 | temperature | 25 | 1440 | > th | dose dependent | sin | 0 | NA |
| 115 | 46.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 139 | 46.47 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 10 |
| 232 | 46.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 247 | 46.99 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 294 | 47.53 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 372 | 47.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 528 | 48.24 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 529 | 48.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 539 | 48.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 546 | 48.29 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 557 | 48.32 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 583 | 48.37 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 594 | 48.41 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 605 | 48.44 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 611 | 48.46 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 622 | 48.49 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 658 | 48.60 | temperature | 25 | 14400 | > th | dose independent | sin | 11 | NA |
| 662 | 48.60 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 674 | 48.62 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 17 |
| 686 | 48.64 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 9 |
| 707 | 48.68 | temperature | 25 | 14400 | < th | dose independent | sin | 11 | NA |
| 713 | 48.69 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 17 |
| 826 | 48.90 | temperature | 20 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 832 | 48.90 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 893 | 48.98 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 975 | 49.09 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 10 |