BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0182800 Os12g0182800|J075097P21
         (89 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48170.1  | chr1:17788810-17789635 FORWARD LENGTH=154          103   3e-23

>AT1G48170.1 | chr1:17788810-17789635 FORWARD LENGTH=154
          Length = 153

 Score =  103 bits (256), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/62 (80%), Positives = 56/62 (90%)

Query: 14  NGVSVTSVLGGTSDNTGSGMARRLVLKTGLNIVLACNIPKDSPMLEAAAERKLIEKLRGL 73
           N VSVTSVLGGTSDNTGSG+ARRLVLKTGLNI+LACNIPK++P+LEA AE+ LI KL  L
Sbjct: 83  NTVSVTSVLGGTSDNTGSGIARRLVLKTGLNIILACNIPKNNPLLEAKAEKVLIRKLIDL 142

Query: 74  GY 75
           GY
Sbjct: 143 GY 144



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.129    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,905,955
Number of extensions: 67509
Number of successful extensions: 102
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 1
Length of query: 89
Length of database: 11,106,569
Length adjustment: 60
Effective length of query: 29
Effective length of database: 9,461,609
Effective search space: 274386661
Effective search space used: 274386661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 104 (44.7 bits)