Os12g0179800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Silent information regulator protein Sir2 family protein.
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Os12g0179800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Silent information regulator protein Sir2 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.32 | 0.316 | 9.7 | -1.53 | 0.624 | -0.585 | -0.337 | 0.379 | -0.491 | 11.2 | 20.51 | 257 | -- | -- |
| 45.68 | 0.315 | 9.71 | -1.6 | 0.648 | -0.611 | -0.264 | -- | -0.509 | 11.2 | 20.51 | 209 | -- | -- |
| 45.65 | 0.315 | 9.7 | -1.56 | 0.651 | -0.584 | -- | 0.317 | -0.493 | 11.1 | 20.58 | 209 | -- | -- |
| 45.97 | 0.316 | 9.71 | -1.62 | 0.651 | -0.607 | -- | -- | -0.511 | 11.1 | 20.5 | 206 | -- | -- |
| 64.75 | 0.375 | 9.73 | -1.51 | -- | -0.627 | -- | 0.543 | -0.486 | -- | 20.5 | 573 | -- | -- |
| 59.3 | 0.361 | 9.73 | -1.79 | 0.586 | -- | -0.207 | -- | -0.632 | 10.6 | -- | -- | -- | -- |
| 59.47 | 0.361 | 9.73 | -1.8 | 0.587 | -- | -- | -- | -0.633 | 10.6 | -- | -- | -- | -- |
| 65.48 | 0.377 | 9.72 | -1.57 | -- | -0.696 | -- | -- | -0.485 | -- | 20.59 | 570 | -- | -- |
| 61.61 | 0.366 | 9.62 | -- | 0.573 | -1.53 | -- | -- | -0.107 | 10.5 | 17.65 | 47520 | -- | -- |
| 80.67 | 0.42 | 9.75 | -1.81 | -- | -- | -- | -- | -0.636 | -- | -- | -- | -- | -- |
| 144.81 | 0.563 | 9.69 | -- | 0.6 | -- | -- | -- | -0.433 | 10.8 | -- | -- | -- | -- |
| 81.15 | 0.42 | 9.63 | -- | -- | -1.56 | -- | -- | -0.124 | -- | 17.1 | 47520 | -- | -- |
| 167.09 | 0.603 | 9.7 | -- | -- | -- | -- | -- | -0.435 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.45 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 18 |
| 3 | 43.72 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 20 |
| 16 | 44.45 | temperature | 20 | 270 | > th | dose independent | sin | 9 | NA |
| 34 | 45.36 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 10 |
| 51 | 45.85 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 23 |
| 55 | 45.89 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 16 |
| 63 | 45.95 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 23 |
| 64 | 45.97 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 65 | 45.97 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 74 | 46.02 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 22 |
| 75 | 46.04 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 6 |
| 83 | 46.09 | wind | 7 | 43200 | < th | dose dependent | rect. | 3 | 8 |
| 85 | 46.10 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 87 | 46.10 | wind | 7 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 105 | 46.17 | temperature | 20 | 720 | > th | dose independent | sin | 16 | NA |
| 168 | 46.30 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 207 | 46.37 | temperature | 20 | 270 | < th | dose independent | rect. | 17 | 18 |
| 216 | 46.38 | wind | 7 | 43200 | < th | dose dependent | rect. | 7 | 4 |
| 280 | 46.46 | wind | 7 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 301 | 46.49 | wind | 7 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 379 | 46.57 | temperature | 20 | 270 | < th | dose independent | rect. | 9 | 22 |
| 406 | 46.60 | wind | 1 | 43200 | > th | dose dependent | rect. | 21 | 9 |
| 407 | 46.60 | wind | 9 | 43200 | < th | dose dependent | rect. | 21 | 9 |
| 444 | 46.64 | temperature | 20 | 10 | > th | dose independent | sin | 8 | NA |
| 474 | 46.66 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 480 | 46.67 | wind | 3 | 43200 | > th | dose dependent | sin | 7 | NA |
| 553 | 46.73 | temperature | 15 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 582 | 46.75 | temperature | 10 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 588 | 46.76 | temperature | 20 | 270 | < th | dose independent | sin | 10 | NA |
| 590 | 46.76 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 10 |
| 591 | 46.76 | wind | 9 | 43200 | < th | dose dependent | sin | 7 | NA |
| 621 | 46.78 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 657 | 46.81 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 679 | 46.82 | temperature | 10 | 14400 | > th | dose dependent | rect. | 5 | 11 |
| 685 | 46.83 | temperature | 10 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 691 | 46.83 | temperature | 10 | 14400 | > th | dose dependent | rect. | 5 | 9 |
| 700 | 46.84 | temperature | 10 | 14400 | > th | dose dependent | rect. | 9 | 7 |
| 711 | 46.85 | temperature | 30 | 4320 | < th | dose dependent | rect. | 9 | 2 |
| 744 | 46.87 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 779 | 46.89 | temperature | 10 | 14400 | > th | dose dependent | sin | 1 | NA |
| 781 | 46.89 | temperature | 10 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 834 | 46.92 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 836 | 46.92 | temperature | 10 | 14400 | > th | dose dependent | rect. | 13 | 3 |
| 862 | 46.93 | temperature | 30 | 14400 | < th | dose dependent | rect. | 5 | 7 |
| 906 | 46.95 | temperature | 10 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 919 | 46.96 | temperature | 20 | 14400 | < th | dose independent | sin | 13 | NA |
| 982 | 46.98 | temperature | 20 | 14400 | < th | dose independent | rect. | 19 | 8 |
| 983 | 46.98 | temperature | 20 | 14400 | < th | dose independent | rect. | 17 | 14 |