BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0179800 Os12g0179800|AK067069
         (393 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G09230.7  | chr5:2871559-2873613 FORWARD LENGTH=377            418   e-117
AT5G55760.1  | chr5:22567282-22570716 FORWARD LENGTH=474           89   4e-18

>AT5G09230.7 | chr5:2871559-2873613 FORWARD LENGTH=377
          Length = 376

 Score =  418 bits (1074), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 196/309 (63%), Positives = 237/309 (76%)

Query: 82  QFLRDKQIVPDSDPPSAKDVDLLYRFIDQSKKLMVLTGAGMSTESGIPDYRSPNGAYSSG 141
           +FLRD++IVPD+DPP+ +D+  LYR  +QS +L +LTGAG+STE GIPDYRSPNGAYSSG
Sbjct: 66  RFLRDRKIVPDADPPNMEDIHKLYRLFEQSSRLTILTGAGVSTECGIPDYRSPNGAYSSG 125

Query: 142 FKPLTHQEFVXXXXXXXXXXXXXXXXXXXFRRAQPNSAHYALASLERIGRVHSMVTQNVD 201
           FKP+THQEF                    F  AQP  AH ALASLE+ GR++ M+TQNVD
Sbjct: 126 FKPITHQEFTRSSRARRRYWARSYAGWRRFTAAQPGPAHTALASLEKAGRINFMITQNVD 185

Query: 202 RLHHRAGSKPVELHGSVYEVACLDCGTSIDRESFQEQVKDLNPKWALAIDSLEVGQPGSD 261
           RLHHRAGS P+ELHG+VY V CL+CG S  R+ FQ+Q+K +NPKWA AI+S++ G PGS+
Sbjct: 186 RLHHRAGSDPLELHGTVYTVMCLECGFSFPRDLFQDQLKAINPKWAEAIESIDHGDPGSE 245

Query: 262 KSFGMQQRPDGDIEIDEKFWEQDFDIPSCNQCGGVLKPDVVMFGDNVPEERAESTKEAAR 321
           KSFGM+QRPDGDIEIDEKFWE+ F IP C +C GVLKPDV+ FGDN+P+ERA    E A+
Sbjct: 246 KSFGMKQRPDGDIEIDEKFWEEGFHIPVCEKCKGVLKPDVIFFGDNIPKERATQAMEVAK 305

Query: 322 NCDALLVVGSALMTMSAFRLARLAHEANAPIAAITIGETRADSILSLKINARCGEILPRI 381
             DA LV+GS+LMTMSAFRL R AHEA A  A + IGETRAD I+ LKINAR GEIL R+
Sbjct: 306 QSDAFLVLGSSLMTMSAFRLCRAAHEAGAMTAIVNIGETRADDIVPLKINARVGEILHRV 365

Query: 382 LQMGSLAVP 390
           L +GSL+VP
Sbjct: 366 LDVGSLSVP 374



>AT5G55760.1 | chr5:22567282-22570716 FORWARD LENGTH=474
          Length = 473

 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 117/293 (39%), Gaps = 60/293 (20%)

Query: 101 VDLLYRFIDQSKKLMVLTGAGMSTESGIPDYRSPNGAYSSGFKPLTHQEFVXXXXXXXXX 160
           ++ L + I +SK L+V TGAG+ST  GIPD+R P G ++                     
Sbjct: 34  IEELAKLIQKSKHLVVFTGAGISTSCGIPDFRGPKGIWT-----------------LQRE 76

Query: 161 XXXXXXXXXXFRRAQPNSAHYALASLERIGRVHSMVTQNVDRLHHRAG---SKPVELHGS 217
                     F RA P+  H AL  LER G +  +++QNVD LH R+G    K  ELHG 
Sbjct: 77  GKDLPKASLPFHRAMPSMTHMALVELERAGILKFVISQNVDGLHLRSGIPREKLSELHGD 136

Query: 218 VYEVACLDCGTSIDRESFQEQVKDLNPKWALAIDSLEVGQPGSDKSFGMQQRPDGDIEID 277
            +   C  CG    R                                        D E++
Sbjct: 137 SFMEMCPSCGAEYLR----------------------------------------DFEVE 156

Query: 278 EKFWEQDFDIPSCNQCGGVLKPDVVMFGDNVPEERAESTKEAARNCDALLVVGSALMTMS 337
               ++     S  +CG  LK  V+ + D +P +  +  ++  +  D +L +G++L    
Sbjct: 157 TIGLKETSRKCSVEKCGAKLKDTVLDWEDALPPKEIDPAEKHCKKADLVLCLGTSLQITP 216

Query: 338 AFRLARLAHEANAPIAAITIGETRADSILSLKINARCGEILPRILQMGSLAVP 390
           A  L     +    I  + + +T  D   ++ I+    +++  +++  ++ +P
Sbjct: 217 ACNLPLKCLKGGGKIVIVNLQKTPKDKKANVVIHGLVDKVVAGVMESLNMKIP 269



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,898,490
Number of extensions: 318270
Number of successful extensions: 695
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 693
Number of HSP's successfully gapped: 2
Length of query: 393
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 292
Effective length of database: 8,337,553
Effective search space: 2434565476
Effective search space used: 2434565476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)