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Os12g0170800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Citrate binding protein precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.13 (0.0489) R2 : 0.585
β1 : 2.26 (0.177) R2dD : 0.156 R2D : -0.00604
β2 : 1.64 (0.119) R2dC : 0.172 R2C : 0.101
β3 : -1.35 (0.222) R2dE : 0.0398 R2E : -0.12
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.96 (0.11) R2dN8 : 0.444 R2N8 : 0.18
σ : 0.9
deviance : 373.38
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C
peak time of C : 2.83
E
wheather : atmosphere
threshold : 1005
memory length : 337
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
359.3 0.891 8.15 2.17 1.64 -1.29 -0.299 2.89 1.96 2.87 1004 278 -- --
372.72 0.899 8.13 2.25 1.65 -1.34 -0.421 -- 1.96 2.87 1005 326 -- --
359.6 0.883 8.15 2.17 1.63 -1.29 -- 2.91 1.96 2.85 1004 279 -- --
373.38 0.9 8.13 2.26 1.64 -1.35 -- -- 1.96 2.83 1005 337 -- --
503.01 1.04 8.13 2.21 -- -1.57 -- 2.66 2.08 -- 1005 673 -- --
401.81 0.94 8.19 2.31 1.68 -- -0.6 -- 1.71 2.61 -- -- -- --
403.07 0.94 8.19 2.33 1.68 -- -- -- 1.72 2.58 -- -- -- --
512.08 1.05 8.11 2.22 -- -1.84 -- -- 2.05 -- 1006 813 -- --
495.99 1.04 8.21 -- 1.6 -1.93 -- -- 1.61 2.62 1008 1774 -- --
568.08 1.11 8.18 2.4 -- -- -- -- 1.76 -- -- -- -- --
545.72 1.09 8.25 -- 1.72 -- -- -- 1.46 2.6 -- -- -- --
637.12 1.18 8.18 -- -- -2.46 -- -- 1.73 -- 1007 1033 -- --
719.74 1.25 8.24 -- -- -- -- -- 1.49 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 354.83 atmosphere 1005 30 > th dose independent rect. 21 20
2 355.36 atmosphere 1005 270 > th dose independent rect. 20 14
7 356.06 atmosphere 995 43200 < th dose dependent rect. 12 15
8 356.06 atmosphere 995 43200 < th dose dependent rect. 11 19
11 356.26 atmosphere 1005 720 < th dose independent rect. 17 12
15 356.60 atmosphere 1005 720 < th dose independent rect. 19 8
18 356.79 atmosphere 1005 270 > th dose dependent rect. 11 22
33 357.51 atmosphere 1005 270 > th dose independent rect. 19 19
35 357.65 atmosphere 1005 270 < th dose independent sin 10 NA
38 357.70 temperature 20 1440 < th dose independent rect. 1 2
39 357.71 temperature 20 1440 > th dose independent rect. 1 2
40 357.71 temperature 20 1440 < th dose independent rect. 24 4
41 357.71 atmosphere 1005 270 > th dose dependent rect. 20 13
43 357.72 atmosphere 995 43200 < th dose dependent rect. 13 12
46 357.77 atmosphere 1005 30 > th dose independent rect. 18 23
51 357.80 atmosphere 1005 270 < th dose independent rect. 19 14
53 357.83 atmosphere 995 43200 < th dose dependent sin 16 NA
59 357.89 atmosphere 1005 270 < th dose independent rect. 17 17
63 358.00 atmosphere 995 43200 < th dose independent rect. 18 21
65 358.01 atmosphere 995 43200 > th dose independent rect. 21 18
66 358.01 atmosphere 995 43200 < th dose independent rect. 21 18
73 358.06 atmosphere 1005 270 > th dose dependent sin 10 NA
74 358.08 atmosphere 1005 720 < th dose independent sin 13 NA
109 358.78 radiation 1 1440 > th dose independent rect. 10 5
111 358.86 atmosphere 1005 270 > th dose dependent rect. 20 20
127 359.06 atmosphere 995 43200 > th dose independent sin 6 NA
133 359.11 radiation 1 1440 < th dose independent rect. 11 2
135 359.11 radiation 1 1440 < th dose dependent rect. 11 2
142 359.20 atmosphere 1005 720 < th dose independent rect. 21 5
147 359.24 atmosphere 1005 270 > th dose independent sin 11 NA
182 359.66 atmosphere 995 43200 < th dose independent sin 6 NA
187 359.71 atmosphere 1005 10 > th dose dependent rect. 21 20
242 360.35 atmosphere 1005 30 > th dose independent rect. 7 23
256 360.50 atmosphere 1005 30 > th dose independent rect. 21 23
257 360.51 atmosphere 1005 30 > th dose independent rect. 13 23
264 360.56 atmosphere 1005 270 > th dose dependent rect. 4 23
271 360.66 atmosphere 1005 270 > th dose dependent no NA NA
279 360.71 atmosphere 1005 30 < th dose independent sin 6 NA
313 360.93 atmosphere 1005 720 > th dose independent rect. 15 14
316 360.96 atmosphere 1010 270 < th dose dependent sin 10 NA
333 361.13 atmosphere 1010 270 < th dose dependent rect. 17 16
358 361.28 atmosphere 1005 720 > th dose dependent rect. 13 17
392 361.57 atmosphere 1005 720 > th dose independent sin 14 NA
412 361.72 atmosphere 1005 30 > th dose independent rect. 2 23
429 361.85 temperature 20 1440 > th dose independent rect. 24 9
454 361.97 temperature 20 1440 < th dose dependent rect. 3 1
455 361.98 atmosphere 1005 30 < th dose independent rect. 17 23
475 362.12 atmosphere 1005 30 < th dose independent rect. 13 23
492 362.24 atmosphere 1005 30 < th dose independent rect. 19 23
496 362.25 atmosphere 1005 720 > th dose independent rect. 17 10
499 362.26 temperature 20 1440 < th dose independent rect. 24 9
501 362.26 atmosphere 1005 30 < th dose independent rect. 3 23
508 362.30 atmosphere 1005 30 < th dose independent rect. 15 23
509 362.30 atmosphere 1005 30 < th dose independent rect. 21 23
523 362.34 atmosphere 1005 30 < th dose independent rect. 23 23
528 362.37 atmosphere 1005 30 < th dose independent no NA NA
538 362.40 atmosphere 1005 30 < th dose independent rect. 1 23
540 362.41 atmosphere 1005 30 > th dose independent no NA NA
542 362.41 atmosphere 1005 30 < th dose independent rect. 5 23
554 362.49 atmosphere 995 43200 < th dose dependent sin 9 NA
557 362.51 atmosphere 1005 30 < th dose independent rect. 7 23
574 362.58 atmosphere 1005 30 < th dose independent rect. 9 23
577 362.59 atmosphere 1005 30 < th dose independent rect. 11 23
586 362.64 atmosphere 1005 720 > th dose dependent sin 14 NA
599 362.68 atmosphere 995 43200 < th dose dependent rect. 14 9
711 363.22 atmosphere 1005 10 > th dose dependent sin 7 NA
736 363.33 atmosphere 1010 270 < th dose dependent rect. 21 12
792 363.56 atmosphere 1005 30 > th dose independent rect. 15 23
804 363.60 atmosphere 995 43200 < th dose independent rect. 24 22
820 363.65 atmosphere 1005 10 < th dose independent rect. 22 13
844 363.76 atmosphere 995 43200 < th dose independent rect. 7 21
928 364.03 atmosphere 995 43200 > th dose independent rect. 4 5
933 364.03 atmosphere 1005 10 > th dose dependent rect. 13 23
936 364.05 atmosphere 1005 10 < th dose independent rect. 20 15
947 364.08 atmosphere 1005 10 > th dose dependent rect. 21 15
961 364.11 atmosphere 995 43200 < th dose dependent rect. 4 4
971 364.13 atmosphere 1005 10 > th dose dependent rect. 23 13
979 364.15 atmosphere 995 43200 < th dose independent rect. 8 19
990 364.20 atmosphere 995 43200 > th dose independent rect. 3 7