Os12g0168000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 5-formyltetrahydrofolate cyclo-ligase family protein.
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Os12g0168000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 5-formyltetrahydrofolate cyclo-ligase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.42 | 0.217 | 11.6 | -0.972 | 0.409 | 0.29 | 0.221 | -1.12 | -0.279 | 1.82 | 2.862 | 1462 | -- | -- |
| 22.36 | 0.22 | 11.6 | -1.01 | 0.373 | 0.523 | 0.34 | -- | -0.296 | 2 | 0.5806 | 1508 | -- | -- |
| 21.56 | 0.216 | 11.6 | -0.976 | 0.424 | 0.269 | -- | -1.09 | -0.273 | 1.79 | 2.89 | 1436 | -- | -- |
| 22.15 | 0.219 | 11.6 | -1.09 | 0.343 | 0.502 | -- | -- | -0.308 | 2.11 | 0.6 | 1535 | -- | -- |
| 23.16 | 0.224 | 11.6 | -1.07 | -- | 0.815 | -- | 0.172 | -0.299 | -- | 0.7283 | 1771 | -- | -- |
| 24.22 | 0.231 | 11.7 | -1.19 | 0.432 | -- | 0.108 | -- | -0.365 | 1.73 | -- | -- | -- | -- |
| 24.26 | 0.231 | 11.7 | -1.19 | 0.432 | -- | -- | -- | -0.366 | 1.75 | -- | -- | -- | -- |
| 23.18 | 0.224 | 11.6 | -1.06 | -- | 0.81 | -- | -- | -0.291 | -- | 0.9504 | 1769 | -- | -- |
| 31.75 | 0.262 | 11.6 | -- | 0.444 | 0.876 | -- | -- | -0.00619 | 1.7 | 0.0108 | 47520 | -- | -- |
| 35.6 | 0.279 | 11.7 | -1.18 | -- | -- | -- | -- | -0.356 | -- | -- | -- | -- | -- |
| 61.81 | 0.368 | 11.6 | -- | 0.41 | -- | -- | -- | -0.233 | 1.67 | -- | -- | -- | -- |
| 43.74 | 0.308 | 11.6 | -- | -- | 0.861 | -- | -- | 0.00514 | -- | 0.009999 | 47520 | -- | -- |
| 72.08 | 0.396 | 11.6 | -- | -- | -- | -- | -- | -0.225 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.15 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 3 | 21.28 | wind | 5 | 14400 | > th | dose independent | rect. | 2 | 14 |
| 18 | 21.32 | wind | 5 | 14400 | < th | dose independent | rect. | 2 | 15 |
| 36 | 21.36 | wind | 5 | 14400 | > th | dose independent | sin | 1 | NA |
| 45 | 21.37 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 12 |
| 46 | 21.37 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 12 |
| 64 | 21.38 | wind | 5 | 14400 | > th | dose dependent | rect. | 3 | 13 |
| 80 | 21.40 | wind | 5 | 14400 | < th | dose independent | sin | 1 | NA |
| 82 | 21.40 | wind | 7 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 94 | 21.41 | wind | 7 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 160 | 21.45 | wind | 5 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 171 | 21.46 | radiation | 1 | 1440 | > th | dose independent | sin | 2 | NA |
| 172 | 21.46 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 182 | 21.46 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 21 |
| 184 | 21.46 | wind | 5 | 14400 | > th | dose dependent | rect. | 20 | 20 |
| 188 | 21.47 | radiation | 1 | 1440 | < th | dose independent | sin | 2 | NA |
| 210 | 21.48 | wind | 5 | 14400 | > th | dose dependent | rect. | 12 | 4 |
| 219 | 21.49 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 229 | 21.49 | wind | 5 | 14400 | > th | dose dependent | sin | 0 | NA |
| 256 | 21.51 | wind | 5 | 14400 | < th | dose independent | rect. | 8 | 8 |
| 276 | 21.51 | wind | 5 | 14400 | > th | dose dependent | rect. | 11 | 20 |
| 286 | 21.52 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 21 |
| 348 | 21.54 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 377 | 21.56 | wind | 5 | 14400 | > th | dose independent | no | NA | NA |
| 390 | 21.56 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 400 | 21.57 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 465 | 21.57 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 466 | 21.57 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 501 | 21.58 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 21 |
| 509 | 21.58 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 516 | 21.58 | wind | 5 | 14400 | > th | dose dependent | rect. | 11 | 11 |
| 531 | 21.59 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 561 | 21.59 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 587 | 21.59 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 605 | 21.60 | wind | 5 | 14400 | > th | dose independent | rect. | 8 | 14 |
| 620 | 21.60 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 621 | 21.60 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 624 | 21.60 | wind | 5 | 14400 | > th | dose dependent | no | NA | NA |
| 630 | 21.60 | temperature | 25 | 10 | < th | dose dependent | rect. | 2 | 10 |
| 645 | 21.61 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 685 | 21.62 | wind | 5 | 14400 | < th | dose independent | no | NA | NA |
| 738 | 21.63 | wind | 5 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 740 | 21.63 | wind | 5 | 14400 | < th | dose independent | rect. | 17 | 23 |
| 743 | 21.63 | temperature | 25 | 90 | < th | dose dependent | sin | 4 | NA |
| 789 | 21.64 | wind | 5 | 14400 | > th | dose independent | rect. | 13 | 23 |
| 791 | 21.64 | wind | 5 | 14400 | < th | dose independent | rect. | 5 | 23 |
| 802 | 21.64 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 811 | 21.65 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 848 | 21.65 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 898 | 21.66 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 918 | 21.67 | wind | 7 | 14400 | > th | dose independent | rect. | 13 | 9 |
| 965 | 21.67 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 22 |