BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0168000 Os12g0168000|AK065623
         (350 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76730.1  | chr1:28803033-28804703 REVERSE LENGTH=355          418   e-117

>AT1G76730.1 | chr1:28803033-28804703 REVERSE LENGTH=355
          Length = 354

 Score =  418 bits (1074), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/260 (77%), Positives = 223/260 (85%)

Query: 83  WKWAIRKRVWDALEAEGVARDPRPVHHRIPNFDGAAAAADSLGRLDVFQDAQCVKVNPDS 142
           WKW IRK++WD +EA   A  PRPVHHRIPNF GA+AAA  L  LD F+ A  VKVNPDS
Sbjct: 91  WKWVIRKKMWDLMEARNYAMSPRPVHHRIPNFVGASAAARKLAELDAFRMAMVVKVNPDS 150

Query: 143 PQKQVRFLTLSGDKKLLTPQPRLRTGFFSVLESHMIPIGCIPEACTSVGAAKYGRPIGLD 202
           PQKQ+RFLTLSG+KKLLTPQPRLRTGFFSVLES ++    I EACTSVG AKYGR IGLD
Sbjct: 151 PQKQIRFLTLSGEKKLLTPQPRLRTGFFSVLESDLLKPETIMEACTSVGVAKYGRAIGLD 210

Query: 203 EKIKVDLIVIGSVAVDPSTGARLGKGEGFAELEYGMLRYMGSISDSTMIVTTVHDKQLVN 262
           EKIKVDLIVIGSVAV+P TGARLGKGEGFAELEYGMLRYMG+I DST +VTTVHD QLV+
Sbjct: 211 EKIKVDLIVIGSVAVNPQTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTTVHDCQLVD 270

Query: 263 DIPVEKLLVHDVPVDIICTPTQVIFTNTTIAKPQGIYWEKLSPEKLGQIRILQELKRRIE 322
           DIP+EKL +HDVPVDIICTPT+VIFTNT I KPQGIYW+KLSPEKL QIRIL+ELK R+E
Sbjct: 271 DIPLEKLAIHDVPVDIICTPTRVIFTNTPIPKPQGIYWDKLSPEKLRQIRILRELKNRLE 330

Query: 323 SETGTTLPCGPSEKLPPTAQ 342
            +TG  LP GPSEKLPPTA+
Sbjct: 331 KKTGRKLPTGPSEKLPPTAE 350



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,118,011
Number of extensions: 258040
Number of successful extensions: 607
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 607
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 251
Effective length of database: 8,392,385
Effective search space: 2106488635
Effective search space used: 2106488635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)