Os12g0164800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF676, hydrolase-like domain containing protein.
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Os12g0164800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF676, hydrolase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.39 | 0.33 | 6.78 | -1.94 | 0.127 | -84.4 | 0.296 | -177 | 0.349 | 1.42 | 15.01 | 4606 | -- | -- |
| 54.65 | 0.347 | 7.99 | 0.713 | 0.0969 | -0.471 | 0.49 | -- | 0.37 | 0.81 | 15.01 | 4606 | -- | -- |
| 49.64 | 0.328 | 6.79 | -1.93 | 0.139 | -84.2 | -- | -177 | 0.353 | 2.04 | 15.01 | 4755 | -- | -- |
| 53.43 | 0.34 | 7.98 | 0.758 | 0.0794 | 0.864 | -- | -- | 0.381 | 23.5 | 13.2 | 5226 | -- | -- |
| 50.43 | 0.331 | 6.91 | -1.59 | -- | -88.2 | -- | -185 | 0.366 | -- | 14.83 | 4689 | -- | -- |
| 55.06 | 0.348 | 7.99 | 0.734 | 0.0867 | -- | 0.55 | -- | 0.375 | 0.604 | -- | -- | -- | -- |
| 56.17 | 0.351 | 7.99 | 0.712 | 0.105 | -- | -- | -- | 0.371 | 2.87 | -- | -- | -- | -- |
| 51.65 | 0.335 | 7.98 | 0.794 | -- | 1.34 | -- | -- | 0.394 | -- | 12.91 | 3370 | -- | -- |
| 66.69 | 0.38 | 8 | -- | 0.136 | 0.984 | -- | -- | 0.3 | 2.51 | 13.6 | 3428 | -- | -- |
| 56.81 | 0.352 | 7.99 | 0.717 | -- | -- | -- | -- | 0.374 | -- | -- | -- | -- | -- |
| 69.54 | 0.39 | 8.01 | -- | 0.119 | -- | -- | -- | 0.292 | 2.91 | -- | -- | -- | -- |
| 67.78 | 0.383 | 8 | -- | -- | 0.93 | -- | -- | 0.302 | -- | 13.4 | 3484 | -- | -- |
| 70.35 | 0.391 | 8.01 | -- | -- | -- | -- | -- | 0.294 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.75 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 2 | 45.77 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 29 | 46.72 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 31 | 46.77 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 6 | 6 |
| 34 | 46.80 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 68 | 47.05 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 8 | 11 |
| 104 | 47.20 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 133 | 47.31 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 1 | NA |
| 136 | 47.31 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 15 |
| 137 | 47.31 | atmosphere | 1010.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 152 | 47.34 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 184 | 47.38 | atmosphere | 1010.0 | 14400 | < th | dose dependent | rect. | 7 | 10 |
| 192 | 47.39 | atmosphere | 1010.0 | 14400 | < th | dose dependent | rect. | 8 | 8 |
| 227 | 47.41 | atmosphere | 1010.0 | 14400 | < th | dose dependent | sin | 22 | NA |
| 245 | 47.41 | atmosphere | 1010.0 | 14400 | < th | dose dependent | rect. | 7 | 16 |
| 261 | 47.42 | atmosphere | 1010.0 | 14400 | < th | dose dependent | rect. | 10 | 14 |
| 303 | 47.44 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 2 | NA |
| 342 | 47.45 | atmosphere | 1010.0 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 354 | 47.45 | atmosphere | 1010.0 | 14400 | < th | dose dependent | rect. | 21 | 21 |
| 379 | 47.46 | atmosphere | 1010.0 | 14400 | < th | dose dependent | rect. | 22 | 19 |
| 397 | 47.47 | atmosphere | 1010.0 | 14400 | < th | dose dependent | no | NA | NA |
| 429 | 47.47 | atmosphere | 1010.0 | 14400 | < th | dose dependent | rect. | 10 | 22 |
| 437 | 47.47 | atmosphere | 1010.0 | 14400 | < th | dose dependent | rect. | 14 | 23 |
| 506 | 47.49 | atmosphere | 1010.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 617 | 47.52 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 20 | 20 |
| 625 | 47.52 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 14 | 4 |
| 678 | 47.54 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 691 | 47.54 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 908 | 47.63 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 7 | 16 |
| 920 | 47.63 | temperature | 20.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 927 | 47.64 | atmosphere | 1005.0 | 14400 | < th | dose independent | no | NA | NA |
| 990 | 47.67 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |