BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0164800 Os12g0164800|J065143I12
         (104 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09980.1  | chr1:3256541-3260866 REVERSE LENGTH=803            108   5e-25
AT1G58350.1  | chr1:21663131-21666827 REVERSE LENGTH=795          107   1e-24

>AT1G09980.1 | chr1:3256541-3260866 REVERSE LENGTH=803
          Length = 802

 Score =  108 bits (270), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 50/66 (75%), Positives = 55/66 (83%)

Query: 5   LQPYLKNLYTYMSISGPHLGYWYSSNSLFNSGLWLLKKLKGAQCIHQLTFSDDQDPQNTF 64
           + PY K  +TY+S+SGPHLGY YSSNSLFNSGLWLLKKLK  Q IHQLT +DD D QNTF
Sbjct: 620 MDPYRKYFHTYISLSGPHLGYLYSSNSLFNSGLWLLKKLKSTQVIHQLTLTDDPDLQNTF 679

Query: 65  FYKLCK 70
           FYKLCK
Sbjct: 680 FYKLCK 685



>AT1G58350.1 | chr1:21663131-21666827 REVERSE LENGTH=795
          Length = 794

 Score =  107 bits (266), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 48/66 (72%), Positives = 57/66 (86%)

Query: 5   LQPYLKNLYTYMSISGPHLGYWYSSNSLFNSGLWLLKKLKGAQCIHQLTFSDDQDPQNTF 64
           ++PY K L+TY+S+SGPHLGY YS+NSLFNSGLWLLKKLK  Q IHQLT +DD D ++TF
Sbjct: 612 MEPYRKYLHTYLSLSGPHLGYLYSTNSLFNSGLWLLKKLKSTQVIHQLTLTDDPDLRHTF 671

Query: 65  FYKLCK 70
           FYKLCK
Sbjct: 672 FYKLCK 677



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.138    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,461,709
Number of extensions: 92347
Number of successful extensions: 224
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 2
Length of query: 104
Length of database: 11,106,569
Length adjustment: 74
Effective length of query: 30
Effective length of database: 9,077,785
Effective search space: 272333550
Effective search space used: 272333550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)