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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0163800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0228) R2 : 0.0141
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.123 (0.0481) R2dN8 : 0.0182 R2N8 : 0.0141
σ : 0.43
deviance : 84.99
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
76.58 0.411 3.18 -0.112 0.067 -1.28 -0.921 1.12 0.154 4.5 0.9999 934 -- --
76.64 0.408 3.17 -0.0938 0.0681 -0.97 -0.92 -- 0.151 4.54 1 933 -- --
77.95 0.411 3.18 -0.116 0.163 -1.59 -- 2.67 0.154 8.57 4.209 980 -- --
77.8 0.411 3.16 -0.078 0.161 -0.902 -- -- 0.154 8.75 3.153 969 -- --
79.23 0.415 3.18 -0.0908 -- -1.16 -- 0.96 0.157 -- 3.44 967 -- --
82.93 0.427 3.18 0.0429 0.114 -- -0.741 -- 0.122 5.25 -- -- -- --
83.55 0.428 3.17 0.0449 0.158 -- -- -- 0.126 8.17 -- -- -- --
79.27 0.415 3.17 -0.0763 -- -0.893 -- -- 0.155 -- 3.299 968 -- --
77.95 0.411 3.16 -- 0.161 -0.865 -- -- 0.161 8.76 3.282 968 -- --
84.93 0.431 3.17 0.0462 -- -- -- -- 0.128 -- -- -- -- --
83.6 0.428 3.17 -- 0.159 -- -- -- 0.121 8.15 -- -- -- --
79.41 0.415 3.17 -- -- -0.857 -- -- 0.162 -- 3.437 967 -- --
84.99 0.43 3.18 -- -- -- -- -- 0.123 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 71.56 atmosphere 1005.0 30 > th dose dependent rect. 2 1
2 71.67 wind 3.0 30 < th dose dependent rect. 2 1
3 71.67 temperature 20.0 30 > th dose dependent rect. 2 1
4 71.73 temperature 20.0 30 > th dose independent rect. 2 1
5 71.73 temperature 25.0 30 < th dose independent rect. 2 1
11 71.78 wind 1.0 30 < th dose independent rect. 2 1
13 71.79 atmosphere 1005.0 30 > th dose independent rect. 2 1
18 71.86 humidity 80.0 30 > th dose independent rect. 2 1
21 71.89 temperature 10.0 30 > th dose independent rect. 2 1
24 71.89 humidity 50.0 30 > th dose independent rect. 2 1
28 71.89 atmosphere 1010.0 30 < th dose independent rect. 2 1
30 71.89 radiation 1.0 30 < th dose independent rect. 2 1
35 71.89 precipitation 0.1 30 < th dose independent rect. 2 1
36 71.89 temperature 10.0 30 > th dose independent rect. 3 23
37 71.89 radiation 1.0 30 < th dose dependent rect. 2 1
42 71.89 precipitation 0.1 30 < th dose dependent rect. 2 1
43 71.90 humidity 50.0 30 > th dose dependent rect. 2 1
48 72.06 wind 9.0 1440 < th dose independent rect. 3 1
49 72.06 temperature 10.0 1440 > th dose independent rect. 3 1
52 72.06 temperature 30.0 1440 < th dose independent rect. 3 1
56 72.06 humidity 50.0 1440 > th dose independent rect. 3 1
65 72.06 atmosphere 995.0 1440 > th dose independent rect. 3 1
66 72.06 radiation 1.0 1440 < th dose independent rect. 3 1
86 72.06 temperature 10.0 1440 > th dose independent rect. 4 23
89 72.06 radiation 1.0 1440 < th dose dependent rect. 3 1
98 72.07 radiation 20.0 43200 < th dose dependent rect. 3 1
106 72.17 atmosphere 1015.0 30 < th dose dependent rect. 2 1
109 72.38 temperature 30.0 30 < th dose dependent rect. 2 1
117 72.88 wind 1.0 30 > th dose independent rect. 2 1
133 73.47 atmosphere 995.0 30 > th dose independent rect. 3 23
163 73.60 wind 9.0 30 < th dose independent rect. 3 23
170 74.26 wind 1.0 10 > th dose independent rect. 20 9
176 74.86 precipitation 0.1 30 < th dose independent rect. 3 23
177 74.86 precipitation 0.1 30 < th dose dependent rect. 3 23
178 74.89 wind 1.0 10 > th dose independent rect. 9 20
180 74.99 precipitation 0.1 720 < th dose independent rect. 3 17
181 74.99 precipitation 0.1 720 < th dose dependent rect. 3 17
187 75.29 radiation 1.0 90 < th dose dependent rect. 5 3
189 75.30 radiation 1.0 90 < th dose dependent rect. 5 6
192 75.37 temperature 25.0 90 > th dose dependent rect. 1 5
194 75.51 atmosphere 1010.0 90 < th dose dependent rect. 5 2
195 75.52 humidity 90.0 90 > th dose dependent rect. 5 5
198 75.57 humidity 80.0 90 > th dose dependent rect. 5 3
202 75.65 humidity 90.0 1440 > th dose dependent rect. 12 2
205 75.71 humidity 90.0 1440 > th dose independent rect. 11 3
209 75.74 radiation 1.0 90 < th dose independent rect. 5 3
211 75.74 radiation 1.0 90 < th dose independent rect. 5 6
220 75.92 temperature 10.0 1440 > th dose independent rect. 21 9
223 75.92 temperature 30.0 1440 < th dose independent rect. 21 9
227 75.92 humidity 50.0 1440 > th dose independent rect. 21 9
233 75.92 atmosphere 995.0 1440 > th dose independent rect. 21 9
234 75.92 radiation 20.0 1440 < th dose independent rect. 21 9
243 75.92 temperature 10.0 1440 > th dose independent rect. 6 15
255 76.11 humidity 90.0 90 > th dose dependent rect. 5 9
257 76.16 temperature 25.0 720 > th dose independent rect. 1 1
270 76.25 precipitation 0.1 720 < th dose independent rect. 13 16
272 76.25 precipitation 0.1 720 < th dose dependent rect. 13 16
275 76.28 humidity 90.0 10 > th dose dependent rect. 6 8
279 76.29 wind 3.0 30 < th dose dependent rect. 2 7
282 76.33 precipitation 0.1 270 < th dose independent rect. 6 23
283 76.33 precipitation 0.1 270 < th dose dependent rect. 6 23
284 76.36 temperature 15.0 30 > th dose independent rect. 9 17
292 76.40 atmosphere 1010.0 30 < th dose independent rect. 2 7
293 76.40 atmosphere 1015.0 30 < th dose dependent rect. 5 4
295 76.43 humidity 50.0 4320 > th dose independent rect. 6 4
296 76.43 humidity 90.0 10 > th dose dependent rect. 6 4
298 76.44 wind 9.0 10 < th dose independent rect. 9 17
299 76.45 atmosphere 1010.0 30 < th dose independent rect. 5 4
307 76.48 precipitation 0.1 1440 < th dose independent rect. 19 8
308 76.48 precipitation 0.1 1440 < th dose dependent rect. 19 8
309 76.49 temperature 10.0 1440 > th dose independent rect. 6 4
312 76.49 atmosphere 995.0 1440 > th dose independent rect. 6 4
313 76.49 atmosphere 1015.0 1440 < th dose independent rect. 6 4
314 76.49 temperature 10.0 1440 > th dose independent rect. 10 20
317 76.49 temperature 25.0 270 > th dose dependent rect. 24 7
322 76.51 temperature 25.0 1440 < th dose independent rect. 1 1
327 76.52 radiation 40.0 10 < th dose independent rect. 2 7
329 76.52 wind 9.0 30 < th dose dependent rect. 2 7
331 76.53 precipitation 0.1 30 < th dose independent rect. 20 9
333 76.53 precipitation 0.1 30 < th dose dependent rect. 20 9
334 76.54 humidity 70.0 30 > th dose independent rect. 2 7
339 76.56 atmosphere 995.0 30 > th dose dependent rect. 2 7
341 76.57 humidity 90.0 90 > th dose dependent rect. 5 16
342 76.58 humidity 50.0 4320 > th dose independent rect. 3 7
343 76.58 wind 9.0 30 < th dose independent rect. 20 9
344 76.58 temperature 10.0 30 > th dose independent rect. 20 9
345 76.58 temperature 30.0 30 < th dose independent rect. 20 9
346 76.58 humidity 50.0 30 > th dose independent rect. 20 9
349 76.58 atmosphere 995.0 30 > th dose independent rect. 20 9
350 76.58 radiation 1.0 30 < th dose independent rect. 20 9
355 76.58 temperature 10.0 30 > th dose independent rect. 5 15
357 76.58 atmosphere 1015.0 30 < th dose independent rect. 5 15
360 76.58 radiation 10.0 30 < th dose dependent rect. 20 9
366 76.59 precipitation 0.1 30 < th dose independent rect. 9 17
368 76.59 precipitation 0.1 30 < th dose dependent rect. 9 17
373 76.61 wind 7.0 10 < th dose independent rect. 2 7
378 76.62 atmosphere 1000.0 30 > th dose independent rect. 2 7
379 76.62 atmosphere 995.0 30 > th dose independent rect. 5 15
383 76.64 wind 1.0 90 < th dose independent rect. 16 1
384 76.64 temperature 10.0 1440 > th dose independent rect. 3 7
387 76.64 atmosphere 995.0 1440 > th dose independent rect. 3 7
388 76.64 precipitation 0.1 30 < th dose independent rect. 5 15
389 76.64 temperature 10.0 1440 > th dose independent rect. 10 17
392 76.64 wind 1.0 90 < th dose dependent rect. 16 1
393 76.64 precipitation 0.1 30 < th dose dependent rect. 5 15
395 76.65 temperature 10.0 30 > th dose independent rect. 2 7
397 76.65 temperature 30.0 30 < th dose independent rect. 2 7
398 76.65 humidity 50.0 30 > th dose independent rect. 2 7
404 76.65 humidity 50.0 30 > th dose dependent rect. 2 7
411 76.68 humidity 80.0 90 > th dose independent rect. 5 3
412 76.68 precipitation 0.1 30 < th dose independent rect. 2 7
414 76.68 precipitation 0.1 30 < th dose dependent rect. 2 7
432 76.71 precipitation 0.1 1440 < th dose independent rect. 18 1
433 76.71 precipitation 0.1 1440 < th dose dependent rect. 18 1
444 76.75 atmosphere 995.0 30 > th dose independent rect. 9 17
446 76.75 temperature 10.0 30 > th dose dependent rect. 2 7
455 76.79 precipitation 0.1 720 < th dose independent rect. 16 23
458 76.79 precipitation 0.1 720 < th dose dependent rect. 16 23
472 76.86 radiation 20.0 30 < th dose independent rect. 5 4
473 76.86 temperature 10.0 30 > th dose dependent rect. 20 6
474 76.87 temperature 25.0 720 > th dose dependent rect. 1 1
475 76.88 temperature 30.0 30 < th dose independent rect. 9 17
478 76.89 temperature 30.0 30 < th dose dependent rect. 5 4
507 76.92 humidity 50.0 30 > th dose independent rect. 5 15
510 76.93 humidity 50.0 30 > th dose independent rect. 9 17
518 76.94 wind 9.0 30 < th dose independent rect. 9 20
519 76.94 precipitation 0.1 720 < th dose independent rect. 22 23
523 76.94 precipitation 0.1 720 < th dose dependent rect. 22 23
526 76.95 radiation 40.0 30 < th dose dependent rect. 2 7
529 76.97 precipitation 0.1 720 < th dose independent sin 1 NA
532 76.97 precipitation 0.1 720 < th dose dependent sin 1 NA
543 76.99 wind 9.0 1440 < th dose independent rect. 6 3
552 76.99 humidity 90.0 1440 < th dose independent rect. 10 4
561 77.00 precipitation 0.1 30 < th dose independent rect. 9 20
566 77.00 precipitation 0.1 30 < th dose dependent rect. 9 20
584 77.04 atmosphere 1000.0 30 > th dose independent rect. 5 4
587 77.04 wind 1.0 30 > th dose independent rect. 9 17
595 77.07 precipitation 0.1 720 < th dose independent rect. 16 14
597 77.07 humidity 50.0 30 > th dose independent rect. 3 23
601 77.07 precipitation 0.1 720 < th dose dependent rect. 16 14
604 77.08 radiation 10.0 43200 < th dose dependent rect. 21 6
611 77.09 temperature 30.0 90 < th dose independent rect. 8 8
617 77.10 temperature 15.0 30 > th dose independent rect. 20 6
627 77.10 wind 9.0 30 < th dose independent rect. 5 15
634 77.11 precipitation 0.1 30 < th dose independent rect. 2 18
635 77.11 precipitation 0.1 30 < th dose dependent rect. 2 18
643 77.13 temperature 25.0 720 > th dose independent rect. 24 8
649 77.14 humidity 90.0 1440 < th dose independent rect. 12 2
650 77.14 wind 9.0 30 < th dose independent rect. 5 4
651 77.14 temperature 10.0 30 > th dose independent rect. 5 4
653 77.14 temperature 30.0 30 < th dose independent rect. 5 4
654 77.14 humidity 50.0 30 > th dose independent rect. 5 4
658 77.14 temperature 10.0 30 > th dose independent rect. 9 20
664 77.15 precipitation 0.1 30 < th dose independent rect. 5 4
665 77.15 precipitation 0.1 30 < th dose dependent rect. 5 4
682 77.19 wind 3.0 270 < th dose dependent rect. 5 1
683 77.19 radiation 1.0 1440 < th dose dependent rect. 21 6
688 77.19 humidity 90.0 720 > th dose dependent rect. 5 18
695 77.21 atmosphere 995.0 30 > th dose independent rect. 9 20
701 77.22 temperature 25.0 10 < th dose independent rect. 14 18
712 77.23 precipitation 0.1 720 < th dose independent sin 15 NA
715 77.23 temperature 10.0 1440 > th dose independent rect. 21 6
718 77.23 temperature 30.0 1440 < th dose independent rect. 21 6
722 77.23 humidity 50.0 1440 > th dose independent rect. 21 6
728 77.23 atmosphere 995.0 1440 > th dose independent rect. 21 6
729 77.23 radiation 1.0 1440 < th dose independent rect. 21 6
750 77.23 temperature 10.0 1440 > th dose independent rect. 3 18
753 77.23 precipitation 0.1 720 < th dose dependent sin 15 NA
760 77.24 wind 9.0 30 < th dose independent rect. 20 6
761 77.24 precipitation 0.1 30 < th dose independent rect. 20 6
767 77.24 precipitation 0.1 30 < th dose dependent rect. 20 6
773 77.25 temperature 30.0 30 < th dose independent rect. 20 6
774 77.25 humidity 50.0 30 > th dose independent rect. 20 6
777 77.25 atmosphere 995.0 30 > th dose independent rect. 20 6
778 77.25 radiation 1.0 30 < th dose independent rect. 20 6
783 77.25 temperature 30.0 270 < th dose independent rect. 6 8
786 77.25 temperature 10.0 30 > th dose independent rect. 2 18
788 77.25 atmosphere 995.0 30 > th dose independent rect. 2 18
789 77.25 atmosphere 1015.0 30 < th dose independent rect. 2 18
790 77.25 precipitation 0.1 1440 > th dose dependent rect. 13 1
793 77.25 radiation 1.0 30 < th dose dependent rect. 20 6
808 77.26 wind 9.0 30 < th dose dependent rect. 5 4
811 77.26 humidity 50.0 10 > th dose dependent rect. 17 16
816 77.27 temperature 30.0 30 < th dose independent rect. 9 20
818 77.27 radiation 40.0 30 < th dose dependent rect. 5 15
822 77.28 atmosphere 1015.0 30 < th dose independent rect. 9 17
874 77.34 humidity 50.0 30 > th dose dependent rect. 5 15
916 77.37 wind 1.0 30 > th dose independent rect. 5 15
917 77.37 humidity 50.0 30 > th dose independent rect. 9 20
920 77.38 precipitation 0.1 1440 < th dose independent rect. 13 1
922 77.38 precipitation 0.1 1440 < th dose dependent rect. 13 1
937 77.41 humidity 90.0 720 > th dose dependent sin 22 NA
963 77.43 wind 1.0 30 < th dose dependent rect. 6 1
971 77.44 wind 9.0 1440 < th dose independent rect. 3 6
994 77.46 wind 9.0 270 < th dose independent rect. 6 23