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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0156800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.55 (0.0452) R2 : 0.649
β1 : 1.07 (0.197) R2dD : 0.0383 R2D : 0.00672
β2 : 2.9 (0.103) R2dC : 0.646 R2C : 0.507
β3 : 3.18 (0.263) R2dE : 0.19 R2E : -0.0694
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7 (0.904) R2dD*E : 0.108 R2D*E : -0.138
γ1 : -0.237 (0.0974) R2dN8 : 0.00707 R2N8 : -0.00752
σ : 0.79
deviance : 287.63
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_____
C
peak time of C : 11.6
E
wheather : radiation
threshold : 0.7044
memory length : 1407
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
287.13 0.796 5.55 1.09 2.77 3.16 -0.588 6.94 -0.236 11.6 0.7 1423 -- --
321.86 0.836 5.56 0.331 3.11 2.3 -0.284 -- -0.318 11.4 1.63 1358 -- --
287.63 0.79 5.55 1.07 2.9 3.18 -- 7 -0.237 11.6 0.7044 1407 -- --
322.33 0.836 5.59 0.402 3.21 2.26 -- -- -0.325 11.5 1.62 1355 -- --
443.39 0.986 5.66 0.559 -- 1.78 -- -1.4 -0.122 -- 0.7044 1407 -- --
377.48 0.911 5.59 0.765 2.59 -- -1.14 -- -0.0673 11.6 -- -- -- --
383.09 0.917 5.59 0.718 2.6 -- -- -- -0.0724 11.5 -- -- -- --
438.09 0.975 5.68 1.22 -- 1.96 -- -- -0.177 -- 3.642 82 -- --
325.95 0.841 5.59 -- 3.12 2.32 -- -- -0.349 11.5 1.63 1367 -- --
807.12 1.33 5.65 0.647 -- -- -- -- -0.101 -- -- -- -- --
396.67 0.932 5.61 -- 2.59 -- -- -- -0.152 11.5 -- -- -- --
445.83 0.983 5.68 -- -- 1.91 -- -- -0.252 -- 3.64 84 -- --
818.16 1.34 5.67 -- -- -- -- -- -0.173 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 269.17 temperature 30 14400 < th dose independent rect. 14 1
4 270.62 temperature 30 14400 > th dose independent rect. 14 2
8 272.80 temperature 25 14400 > th dose dependent rect. 13 1
9 273.01 temperature 15 14400 > th dose dependent rect. 13 1
32 274.35 temperature 25 14400 > th dose dependent rect. 12 6
34 274.38 temperature 15 14400 > th dose dependent rect. 13 5
39 274.41 temperature 15 14400 > th dose dependent rect. 12 7
239 275.93 temperature 20 14400 > th dose dependent sin 22 NA
249 275.97 temperature 30 14400 < th dose dependent rect. 13 6
348 276.45 temperature 30 14400 < th dose independent rect. 14 11
350 276.45 temperature 30 14400 < th dose dependent rect. 17 2
354 276.46 temperature 30 14400 < th dose independent rect. 14 18
359 276.47 temperature 30 14400 < th dose independent rect. 14 6
436 276.75 temperature 30 14400 < th dose dependent rect. 9 11
559 277.17 temperature 20 14400 > th dose dependent rect. 8 2
637 277.37 temperature 30 14400 < th dose dependent sin 21 NA
690 277.49 temperature 30 14400 < th dose dependent rect. 13 1
785 277.79 temperature 25 14400 > th dose independent rect. 6 7
795 277.80 temperature 25 14400 < th dose independent rect. 7 4
818 277.85 temperature 25 14400 > th dose independent rect. 7 4
845 277.91 temperature 25 14400 < th dose independent rect. 6 7
934 278.15 temperature 30 14400 < th dose dependent rect. 9 1
969 278.23 temperature 25 14400 < th dose independent rect. 7 2