Os12g0152500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os12g0152500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.79 | 0.565 | 5.89 | -1.48 | 0.521 | 1.2 | 0.263 | -0.185 | -0.608 | 1.05 | 22.99 | 779 | -- | -- |
| 144.82 | 0.56 | 5.89 | -1.5 | 0.523 | 1.24 | 0.293 | -- | -0.614 | 1.05 | 22.9 | 779 | -- | -- |
| 145.04 | 0.561 | 5.88 | -1.47 | 0.521 | 1.21 | -- | -0.273 | -0.605 | 0.921 | 22.94 | 779 | -- | -- |
| 145.15 | 0.561 | 5.89 | -1.51 | 0.523 | 1.26 | -- | -- | -0.614 | 0.904 | 22.83 | 779 | -- | -- |
| 157.42 | 0.584 | 5.89 | -1.54 | -- | 1.33 | -- | 0.242 | -0.634 | -- | 22.85 | 358 | -- | -- |
| 163.64 | 0.6 | 5.93 | -1.82 | 0.419 | -- | 0.507 | -- | -0.806 | 1.94 | -- | -- | -- | -- |
| 164.55 | 0.601 | 5.93 | -1.84 | 0.418 | -- | -- | -- | -0.809 | 1.6 | -- | -- | -- | -- |
| 157.44 | 0.584 | 5.89 | -1.54 | -- | 1.23 | -- | -- | -0.626 | -- | 22.99 | 364 | -- | -- |
| 163.8 | 0.596 | 5.87 | -- | 0.436 | 1.93 | -- | -- | -0.346 | 23.6 | 19.28 | 35607 | -- | -- |
| 175.22 | 0.619 | 5.93 | -1.82 | -- | -- | -- | -- | -0.8 | -- | -- | -- | -- | -- |
| 253.51 | 0.745 | 5.89 | -- | 0.385 | -- | -- | -- | -0.604 | 1.44 | -- | -- | -- | -- |
| 171.46 | 0.61 | 5.81 | -- | -- | 1.94 | -- | -- | -0.304 | -- | 18.8 | 36000 | -- | -- |
| 262.63 | 0.756 | 5.88 | -- | -- | -- | -- | -- | -0.598 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 140.58 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 2 | 140.72 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 1 |
| 3 | 140.79 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 8 | 141.62 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 19 |
| 22 | 142.52 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 29 | 142.71 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 15 |
| 30 | 142.75 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 39 | 142.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 12 |
| 48 | 143.12 | wind | 7 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 53 | 143.23 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 12 |
| 76 | 143.54 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 81 | 143.69 | radiation | 10 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 82 | 143.70 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 92 | 143.82 | wind | 7 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 95 | 143.85 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 100 | 143.95 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 18 |
| 101 | 143.95 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 22 |
| 106 | 144.13 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 15 |
| 107 | 144.14 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 13 |
| 108 | 144.14 | temperature | 10 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 121 | 144.34 | temperature | 25 | 10 | < th | dose independent | rect. | 3 | 10 |
| 142 | 144.52 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 13 |
| 145 | 144.55 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 11 |
| 150 | 144.59 | wind | 7 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 152 | 144.60 | temperature | 20 | 270 | > th | dose dependent | sin | 6 | NA |
| 163 | 144.66 | wind | 7 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 165 | 144.69 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 166 | 144.70 | temperature | 25 | 720 | < th | dose dependent | sin | 6 | NA |
| 196 | 144.83 | wind | 7 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 208 | 144.90 | temperature | 25 | 270 | < th | dose dependent | sin | 3 | NA |
| 219 | 144.93 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 230 | 144.99 | wind | 7 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 234 | 144.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 247 | 145.05 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 16 |
| 257 | 145.11 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 14 |
| 269 | 145.19 | temperature | 25 | 90 | > th | dose independent | sin | 4 | NA |
| 321 | 145.42 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 332 | 145.47 | temperature | 15 | 30 | > th | dose dependent | rect. | 5 | 17 |
| 336 | 145.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 13 |
| 341 | 145.49 | radiation | 10 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 361 | 145.58 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 19 |
| 370 | 145.63 | wind | 7 | 14400 | > th | dose dependent | rect. | 8 | 5 |
| 403 | 145.75 | temperature | 20 | 720 | < th | dose independent | sin | 5 | NA |
| 432 | 145.84 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 434 | 145.85 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 10 |
| 461 | 145.95 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 18 |
| 562 | 146.23 | radiation | 1 | 4320 | < th | dose independent | rect. | 1 | 4 |
| 565 | 146.23 | radiation | 10 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 577 | 146.28 | radiation | 20 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 654 | 146.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 684 | 146.55 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 16 |
| 753 | 146.73 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 758 | 146.75 | wind | 9 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 783 | 146.82 | temperature | 15 | 10 | > th | dose dependent | sin | 4 | NA |
| 788 | 146.84 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 798 | 146.85 | wind | 5 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 817 | 146.89 | temperature | 25 | 10 | > th | dose independent | sin | 4 | NA |
| 860 | 146.95 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 5 |
| 903 | 147.03 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 942 | 147.11 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 23 |
| 946 | 147.11 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 13 |
| 954 | 147.13 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |