BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0152500 Os12g0152500|Os12g0152500
(186 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G22460.1 | chr5:7443659-7445269 REVERSE LENGTH=341 139 8e-34
AT1G74300.1 | chr1:27935368-27936474 FORWARD LENGTH=347 131 3e-31
AT2G36290.1 | chr2:15208867-15210768 REVERSE LENGTH=365 129 1e-30
AT3G48410.1 | chr3:17925786-17928100 REVERSE LENGTH=386 127 4e-30
AT3G54240.1 | chr3:20080926-20082145 FORWARD LENGTH=351 122 1e-28
AT1G74280.1 | chr1:27929758-27931126 FORWARD LENGTH=373 120 4e-28
AT1G74290.1 | chr1:27931836-27934268 FORWARD LENGTH=372 111 2e-25
AT3G03230.1 | chr3:744478-746009 REVERSE LENGTH=334 110 4e-25
AT3G03240.1 | chr3:746781-748291 REVERSE LENGTH=334 110 4e-25
AT1G08310.2 | chr1:2619134-2620338 FORWARD LENGTH=319 92 2e-19
AT3G44510.2 | chr3:16108251-16111139 REVERSE LENGTH=326 91 5e-19
AT3G09690.1 | chr3:2972356-2974592 FORWARD LENGTH=528 54 3e-08
AT5G02970.1 | chr5:695391-697412 FORWARD LENGTH=515 52 1e-07
>AT5G22460.1 | chr5:7443659-7445269 REVERSE LENGTH=341
Length = 340
Score = 139 bits (350), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 109/197 (55%), Gaps = 39/197 (19%)
Query: 5 IGLLVVLVGLAFQAILHPPPQKLCGSPGGPPVTSPRIKLSDRRH-AYKEGGVQKDKA--- 60
+ +LV L+G +++ PPP ++CG P GPPVTSPRIKLSD R+ AY+E GV +D A
Sbjct: 7 VAILVCLIGYIYRS-FKPPPPRICGHPNGPPVTSPRIKLSDGRYLAYRESGVDRDNANYK 65
Query: 61 ---------------------------------KAGYGENYPNPKRNVRSEALDIEELTD 87
+AGYGE+ P+P R V+SEA DI+EL D
Sbjct: 66 IIVVHGFNSSKDTEFPIPKDVIEELGIYFVFYDRAGYGESDPHPSRTVKSEAYDIQELAD 125
Query: 88 QLKLGQKFCVGNVD-GRIPNLGCLQYIPNRLAGAALVLPIINYWWPSSPAELSRQAFMGL 146
+LK+G KF V + G CL+YIP+RLAGA L++P +NYWW P E +A +
Sbjct: 126 KLKIGPKFYVLGISLGAYSVYSCLKYIPHRLAGAVLMVPFVNYWWTKVPQEKLSKALELM 185
Query: 147 IMPEQRTLWIAHNINFL 163
+Q T +AH + +L
Sbjct: 186 PKKDQWTFKVAHYVPWL 202
>AT1G74300.1 | chr1:27935368-27936474 FORWARD LENGTH=347
Length = 346
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 101/188 (53%), Gaps = 41/188 (21%)
Query: 12 VGLAFQAILHPPPQKLCGSPGGPPVTSPRIKLSDRRH-AYKEGGVQKDKAKA-------- 62
+ L +Q+IL PPP LCGSPGGPP+T+PRIKL D RH AYKE G+ ++KAK
Sbjct: 16 LALTYQSILKPPPPNLCGSPGGPPITAPRIKLRDGRHLAYKEYGLPREKAKHKIVFIHGS 75
Query: 63 -------------------------------GYGENYPNPKRNVRSEALDIEELTDQLKL 91
GYGE+ P+P R +S ALDIEEL DQL L
Sbjct: 76 DSCRHDAVFATLLSPDLVQERGVYMVSFDKPGYGESDPDPIRTPKSLALDIEELADQLSL 135
Query: 92 GQKFCV-GNVDGRIPNLGCLQYIPNRLAGAALVLPIINYWWPSSPAELSRQAFMGLIMPE 150
G KF V G G GCL+Y P+RLAG LV P++NY+W + P +S + F +
Sbjct: 136 GSKFYVIGKSMGGQAAWGCLKYTPHRLAGVTLVAPVVNYYWRNLPLNISTEGFNLQQKRD 195
Query: 151 QRTLWIAH 158
Q + +AH
Sbjct: 196 QWAVRVAH 203
>AT2G36290.1 | chr2:15208867-15210768 REVERSE LENGTH=365
Length = 364
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 100/199 (50%), Gaps = 41/199 (20%)
Query: 7 LLVVLVGLAFQAILHPPPQKLCGSPGGPPVTSPRIKLSDRRH-AYKEGGVQKDKA----- 60
L V + + + PPP KLCGSP GP +T PRIKL D R AYKE GV +D+A
Sbjct: 24 LFSVCIATSTYKAIQPPPSKLCGSPDGPSITGPRIKLRDGRQLAYKEHGVPRDEATHKII 83
Query: 61 ----------------------------------KAGYGENYPNPKRNVRSEALDIEELT 86
+ GY E+ P+P R +S ALDIEEL
Sbjct: 84 VVHGSDSCRHDNAFAALLSPDIKEGLGVYMVSFDRPGYAESDPDPNRTPKSLALDIEELA 143
Query: 87 DQLKLGQKF-CVGNVDGRIPNLGCLQYIPNRLAGAALVLPIINYWWPSSPAELSRQAFMG 145
DQL LG KF +G G CL+YIP+RLAG LV P++NYWW + P+E+S +AF
Sbjct: 144 DQLSLGSKFYVIGYSMGGQATWACLKYIPHRLAGVTLVAPVVNYWWKNFPSEISTEAFNQ 203
Query: 146 LIMPEQRTLWIAHNINFLA 164
+Q + +AH +L
Sbjct: 204 QGRNDQWAVRVAHYAPWLT 222
>AT3G48410.1 | chr3:17925786-17928100 REVERSE LENGTH=386
Length = 385
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 103/196 (52%), Gaps = 45/196 (22%)
Query: 7 LLVVLVGL---AFQAILHPPPQKLCGSPGGPPVTSPRIKLSDRRH-AYKEGGVQKDKAKA 62
LLV VG+ +Q I PPP K+ GSPGGP VTSPRIKL D RH AY E G+ +D+AK
Sbjct: 37 LLVTFVGVLAWVYQTI-QPPPAKIVGSPGGPTVTSPRIKLRDGRHLAYTEFGIPRDEAKF 95
Query: 63 ---------------------------------------GYGENYPNPKRNVRSEALDIE 83
GYGE+ PN + RS ALDIE
Sbjct: 96 KIINIHGFDSCMRDSHFANFLSPALVEELRIYIVSFDRPGYGESDPNLNGSPRSIALDIE 155
Query: 84 ELTDQLKLG-QKFCVGNVDGRIPNLGCLQYIPNRLAGAALVLPIINYWWPSSPAELSRQA 142
EL D L LG Q + G G CL YIP+RLAGAALV P INYWW + P +L+R+A
Sbjct: 156 ELADGLGLGPQFYLFGYSMGGEITWACLNYIPHRLAGAALVAPAINYWWRNLPGDLTREA 215
Query: 143 FMGLIMPEQRTLWIAH 158
F + +Q +L +AH
Sbjct: 216 FSLMHPADQWSLRVAH 231
>AT3G54240.1 | chr3:20080926-20082145 FORWARD LENGTH=351
Length = 350
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 107/201 (53%), Gaps = 43/201 (21%)
Query: 6 GLLVVLVGLAFQAI--LHPPPQKLCGSPGGPPVTSPRIKLSDRRH-AYKEGGVQKDKA-- 60
+++VL+GL AI + PPP K CG+PGGPP+T+PRI+LSD R+ AY+E GV + A
Sbjct: 9 AVVIVLIGLGAWAIVSITPPPPKRCGTPGGPPITAPRIRLSDGRYLAYEEHGVSRQNATF 68
Query: 61 -------------------------------------KAGYGENYPNPKRNVRSEALDIE 83
+ GYGE+ P+ RN ++ A D+E
Sbjct: 69 KIVFIHAFSTFRRDAVIANRVRPGFLEKNGIYVVSYDRPGYGESDPHSSRNEKTLAHDVE 128
Query: 84 ELTDQLKLGQKF-CVGNVDGRIPNLGCLQYIPNRLAGAALVLPIINYWWPSSPAELSRQA 142
+L DQL+LG KF VG G G L+YIP+RLAGA L+ P+ N WWPS P L+ +
Sbjct: 129 QLADQLQLGSKFYVVGYSMGGQAVWGVLKYIPHRLAGATLLCPVTNSWWPSFPDSLTWEL 188
Query: 143 FMGLIMPEQRTLWIAHNINFL 163
+ E+ ++ I H+ +L
Sbjct: 189 WNKQSKSERFSMLITHHTPWL 209
>AT1G74280.1 | chr1:27929758-27931126 FORWARD LENGTH=373
Length = 372
Score = 120 bits (301), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 98/192 (51%), Gaps = 41/192 (21%)
Query: 13 GLAFQAILHPPPQKLCGSPGGPPVTSPRIKLSDRRH-AYKEGGVQKDKA----------- 60
+Q+ L PPP KLCGS GGPP+T+PRIKL D R+ AYKE G+ ++KA
Sbjct: 34 AFTYQSKLKPPPPKLCGSSGGPPITAPRIKLQDGRYLAYKEHGLPREKANRKIVFIHGSD 93
Query: 61 ----------------------------KAGYGENYPNPKRNVRSEALDIEELTDQLKLG 92
+ GY E+ P+P R RS DIEEL DQL LG
Sbjct: 94 CCRHDAVFATLLSPDLVEELGVYMVSFDRPGYCESDPHPSRTPRSLVSDIEELADQLSLG 153
Query: 93 QKFCV-GNVDGRIPNLGCLQYIPNRLAGAALVLPIINYWWPSSPAELSRQAFMGLIMPEQ 151
KF V G G GCL+YIP+RLAG LV P++NY+W + P +S + F +Q
Sbjct: 154 SKFYVLGYSMGGQAAWGCLKYIPHRLAGVTLVAPVVNYYWKNLPLNVSTEGFNFQQKRDQ 213
Query: 152 RTLWIAHNINFL 163
+ +AH +L
Sbjct: 214 LAVRVAHYTPWL 225
>AT1G74290.1 | chr1:27931836-27934268 FORWARD LENGTH=372
Length = 371
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 95/189 (50%), Gaps = 43/189 (22%)
Query: 13 GLAFQAILHPPPQKLCGSPGGPPVTSPRIKLSDRRH-AYKEGGVQKDKA----------- 60
L +Q+ L PP KLCGS GPP+T+PRIKL D R+ AYKE G+ ++KA
Sbjct: 34 ALTYQSKLKPPQPKLCGSSSGPPITAPRIKLQDGRYLAYKEHGLPREKANRKIVFIHGSD 93
Query: 61 ----------------------------KAGYGENYPNPKRNVRSEALDIEELTDQLKLG 92
+ GY E+ P+P R RS DIEEL DQL LG
Sbjct: 94 CCRHDAVFATLLSPDLVEELGVYMVSFDRPGYCESDPHPSRTPRSLVSDIEELDDQLSLG 153
Query: 93 QKFCV-GNVDGRIPNLGCL--QYIPNRLAGAALVLPIINYWWPSSPAELSRQAFMGLIMP 149
KF V G G GCL +YIP+RLAG LV P++NY+W + P +S + F
Sbjct: 154 SKFYVIGKSMGGQAAWGCLNLKYIPHRLAGVTLVAPVVNYYWRNLPLNVSTEGFNFQQKR 213
Query: 150 EQRTLWIAH 158
+Q + +AH
Sbjct: 214 DQWAVRVAH 222
>AT3G03230.1 | chr3:744478-746009 REVERSE LENGTH=334
Length = 333
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 86/159 (54%), Gaps = 38/159 (23%)
Query: 38 SPRIKLSDRRH-AYKEGGVQKDKAK----------------------------------- 61
SPRIKL+D RH AYKE G KDKAK
Sbjct: 35 SPRIKLNDGRHLAYKELGFPKDKAKNKIIIVHGNGNSKDVDLYITQEMIDEFKIYFLFFD 94
Query: 62 -AGYGENYPNPKRNVRSEALDIEELTDQLKLGQKF-CVGNVDGRIPNLGCLQYIPNRLAG 119
AGYGE+ PNP R ++++ DIEEL D+L++G KF +G G P GCL+YIPNRL+G
Sbjct: 95 RAGYGESDPNPTRTLKTDTYDIEELADKLQVGPKFHVIGMSLGAYPVYGCLKYIPNRLSG 154
Query: 120 AALVLPIINYWWPSSPAELSRQAFMGLIMPEQRTLWIAH 158
A+LV+P++N+WW P L A L + Q TL +AH
Sbjct: 155 ASLVVPLVNFWWSRVPQNLLNAAMKKLPIGFQLTLRVAH 193
>AT3G03240.1 | chr3:746781-748291 REVERSE LENGTH=334
Length = 333
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 89/164 (54%), Gaps = 38/164 (23%)
Query: 38 SPRIKLSDRRH-AYKEGGVQKDKAK----------------------------------- 61
SPRIKL+D R+ AYKE G KDKAK
Sbjct: 35 SPRIKLNDGRYLAYKELGFPKDKAKNKIIILHGFGSSKLVDLKITQEMIDEFEIYFLLFD 94
Query: 62 -AGYGENYPNPKRNVRSEALDIEELTDQLKLGQKFCV-GNVDGRIPNLGCLQYIPNRLAG 119
AGYGE+ P+P R ++++ DIEEL D+L++G KF V G G P GCL+YIP+RL+G
Sbjct: 95 RAGYGESDPHPSRTLKTDTYDIEELADKLQIGPKFHVLGMSLGAYPVYGCLKYIPHRLSG 154
Query: 120 AALVLPIINYWWPSSPAELSRQAFMGLIMPEQRTLWIAHNINFL 163
A LV+PI+N+WW P LS AF L + Q TL +AH +L
Sbjct: 155 ATLVVPILNFWWSCLPLNLSISAFKKLPIQNQWTLGVAHYFPWL 198
>AT1G08310.2 | chr1:2619134-2620338 FORWARD LENGTH=319
Length = 318
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 77/153 (50%), Gaps = 41/153 (26%)
Query: 32 GGPPVTSPRIKLSDRRH-AYKEGGVQKDKAK----------------------------- 61
G P +S R+KL D R AYKE GV K+KAK
Sbjct: 2 GDSPASSNRVKLRDGRFLAYKERGVPKEKAKYKIILVHGFGSSKDMNFSASKFFQELIEE 61
Query: 62 ----------AGYGENYPNPKRNVRSEALDIEELTDQLKLGQKF-CVGNVDGRIPNLGCL 110
+GYG + N KR++ SE DI EL DQL+LG KF +G G P GCL
Sbjct: 62 LEVYLLFYDRSGYGASDSNTKRSLESEVEDIAELADQLELGPKFYLIGISMGSYPTWGCL 121
Query: 111 QYIPNRLAGAALVLPIINYWWPSSPAELSRQAF 143
++IP+RL+G A V P++NY WPS P +L ++ +
Sbjct: 122 RHIPHRLSGVAFVAPVVNYRWPSLPKKLIKKDY 154
>AT3G44510.2 | chr3:16108251-16111139 REVERSE LENGTH=326
Length = 325
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 82/157 (52%), Gaps = 40/157 (25%)
Query: 40 RIKLSDRRH-AYKEGGVQKDKAK------------------------------------A 62
RIKL D R+ AYKE GV KD AK A
Sbjct: 8 RIKLHDGRYLAYKERGVPKDDAKFTIVLVHGFGSSKDMNFNVSQELVNEIGIYFVLYDRA 67
Query: 63 GYGENYPNPKRNVRSEALDIEELTDQLKLGQKF-CVGNVDGRIPNLGCLQYIPNRLAGAA 121
GYGE+ PNPKR+++SEA D++EL D L++G +F +G G CL++IP RLAG A
Sbjct: 68 GYGESDPNPKRSLKSEAYDVQELADGLEIGSRFYLIGISMGSYTVWSCLKHIPQRLAGVA 127
Query: 122 LVLPIINYWWPSSPAELSRQAFMGLIMPEQRTLWIAH 158
+V P++N+ WPS P L + + + + ++WIA+
Sbjct: 128 MVAPVVNFRWPSIPKSLMPKDYRREV--AKWSVWIAN 162
>AT3G09690.1 | chr3:2972356-2974592 FORWARD LENGTH=528
Length = 527
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 40/170 (23%)
Query: 7 LLVVLVGLAFQAILHPPPQKLCGSPGGPPVTSPRIKLSDRRH-AYKEGGVQKDKAKA--- 62
L+ L L+F + H L P ++ R++L D R+ AY+E GV D+A+
Sbjct: 133 FLLALTALSFSSD-HDRSVPLLKKIRLHPTSASRVQLPDGRYLAYQELGVSADRARHSLI 191
Query: 63 ----------------------------------GYGENYPNPKRNVRSEALDIEELTDQ 88
G+GE+ P+ RN+ S A D+ +L
Sbjct: 192 VPHSFLSSRLAGIPGVKESLLKDYGVRLVSYDLPGFGESDPHRARNLSSSASDMIDLAAA 251
Query: 89 LKLGQKF-CVGNVDGRIPNLGCLQYIPNRLAGAALVLPIINYWWPSSPAE 137
L + KF +G G + ++Y P+++AG A+V P+IN + PS E
Sbjct: 252 LGIVDKFWLLGYSSGSVHAWAAMRYFPDQIAGVAMVAPMINPYEPSMTKE 301
>AT5G02970.1 | chr5:695391-697412 FORWARD LENGTH=515
Length = 514
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 10/95 (10%)
Query: 63 GYGENYPNPKRNVRSEALDIEELTDQLKLGQKF-CVGNVDGRIPNLGCLQYIPNRLAGAA 121
G+GE+ P+ RN+ S A D+ L + + +KF +G G I ++Y P ++AGAA
Sbjct: 223 GFGESDPHRGRNLSSSASDMINLAAAIGIDEKFWLLGYSTGSIHTWAGMKYFPEKIAGAA 282
Query: 122 LVLPIINYWWPSSPAE---------LSRQAFMGLI 147
+V P+IN + PS E L+++ FM +
Sbjct: 283 MVAPVINPYEPSMVKEEVVKTWEQWLTKRKFMYFL 317
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.141 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,687,938
Number of extensions: 205606
Number of successful extensions: 543
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 528
Number of HSP's successfully gapped: 20
Length of query: 186
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 93
Effective length of database: 8,556,881
Effective search space: 795789933
Effective search space used: 795789933
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)