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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0152200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF295 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.31 (0.0395) R2 : 0.763
β1 : 3.67 (0.151) R2dD : 0.368 R2D : 0.184
β2 : 2.87 (0.0994) R2dC : 0.44 R2C : 0.42
β3 : 2.13 (0.161) R2dE : 0.121 R2E : -0.0478
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.943 (0.0912) R2dN8 : 0.0931 R2N8 : -0.0632
σ : 0.719
deviance : 238.34
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_____
C
peak time of C : 19.2
E
wheather : radiation
threshold : 2.318
memory length : 11573
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
220.52 0.698 4.33 3.3 2.87 2.52 2.14 2.27 0.892 19.3 1.885 11562 -- --
226.16 0.7 4.32 3.63 2.92 1.98 2.43 -- 0.895 19.4 2.453 11480 -- --
232.74 0.711 4.33 3.23 2.87 2.53 -- 2.33 0.899 19.2 1.971 11576 -- --
238.34 0.719 4.31 3.67 2.87 2.13 -- -- 0.943 19.2 2.318 11573 -- --
667.22 1.2 4.27 3.13 -- 2.71 -- 2.76 0.865 -- 1.974 11586 -- --
320.46 0.839 4.39 3.01 2.9 -- 2.17 -- 0.454 19.2 -- -- -- --
333.08 0.855 4.39 2.97 2.9 -- -- -- 0.458 19.2 -- -- -- --
673.55 1.21 4.19 3.64 -- 2.29 -- -- 0.998 -- 2.739 11590 -- --
518.92 1.06 4.29 -- 3.13 1.89 -- -- 0.858 19.1 30 9171 -- --
779.45 1.3 4.33 2.92 -- -- -- -- 0.409 -- -- -- -- --
565.13 1.11 4.47 -- 2.87 -- -- -- 0.128 19.3 -- -- -- --
904.45 1.4 4.23 -- -- 1.88 -- -- 0.72 -- 10 8728 -- --
1003.64 1.48 4.4 -- -- -- -- -- 0.0851 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 208.25 radiation 40.0 14400 < th dose dependent rect. 18 3
3 208.37 radiation 10.0 14400 < th dose dependent rect. 18 11
18 209.50 radiation 10.0 14400 < th dose dependent rect. 18 8
24 209.83 radiation 10.0 14400 < th dose dependent rect. 18 6
45 212.17 radiation 1.0 14400 < th dose independent rect. 18 11
46 212.60 radiation 1.0 14400 > th dose dependent rect. 18 1
56 213.52 wind 9.0 43200 > th dose dependent rect. 18 2
57 213.54 radiation 1.0 14400 < th dose independent rect. 18 3
67 214.16 radiation 1.0 14400 > th dose independent rect. 18 11
70 215.48 radiation 1.0 14400 < th dose independent rect. 18 17
72 215.52 radiation 1.0 14400 > th dose independent rect. 18 1
83 215.76 radiation 30.0 14400 > th dose independent rect. 7 1
99 216.01 humidity 60.0 43200 > th dose independent rect. 15 1
100 216.10 radiation 1.0 14400 > th dose independent rect. 18 17
101 216.14 radiation 10.0 43200 > th dose independent rect. 5 1
113 216.22 radiation 30.0 14400 < th dose independent rect. 7 1
121 216.64 precipitation 0.1 43200 > th dose independent rect. 14 4
123 216.72 humidity 90.0 43200 < th dose independent rect. 8 1
124 216.72 precipitation 0.1 43200 < th dose independent rect. 14 4
125 216.72 precipitation 0.1 43200 < th dose dependent rect. 14 4
126 216.76 wind 3.0 43200 < th dose dependent rect. 2 2
132 217.19 radiation 30.0 14400 < th dose independent rect. 24 8
135 217.25 humidity 80.0 43200 > th dose dependent rect. 9 2
136 217.29 humidity 90.0 43200 > th dose independent rect. 8 2
140 217.34 radiation 30.0 14400 < th dose independent rect. 17 15
146 217.42 radiation 30.0 14400 < th dose independent rect. 19 13
148 217.43 radiation 30.0 14400 < th dose independent rect. 5 3
156 217.48 humidity 60.0 43200 > th dose independent rect. 14 8
170 217.71 precipitation 0.1 43200 > th dose dependent rect. 13 6
187 218.03 radiation 1.0 14400 < th dose independent sin 10 NA
212 218.58 radiation 1.0 14400 > th dose independent sin 10 NA
223 218.71 humidity 60.0 43200 < th dose independent rect. 15 2
238 218.88 precipitation 0.1 43200 > th dose dependent rect. 14 8
242 218.95 radiation 1.0 14400 < th dose independent rect. 5 6
244 219.01 radiation 1.0 14400 > th dose independent rect. 5 6
246 219.07 radiation 1.0 14400 < th dose independent rect. 1 10
247 219.08 radiation 1.0 14400 < th dose independent rect. 3 8
281 219.27 humidity 60.0 43200 < th dose independent rect. 14 8
287 219.28 humidity 60.0 43200 < th dose independent rect. 14 10
304 219.31 radiation 20.0 14400 > th dose dependent rect. 16 16
339 219.46 wind 5.0 43200 < th dose independent rect. 5 1
355 219.60 radiation 20.0 14400 > th dose dependent rect. 6 2
382 219.68 radiation 1.0 14400 < th dose independent rect. 7 23
471 220.15 radiation 1.0 14400 < th dose dependent rect. 18 17
487 220.35 radiation 1.0 14400 > th dose independent rect. 7 23
509 220.49 wind 3.0 43200 > th dose dependent rect. 5 1
525 220.56 radiation 1.0 14400 < th dose independent rect. 3 18
526 220.56 radiation 1.0 14400 < th dose independent rect. 1 20
549 220.59 radiation 1.0 14400 < th dose independent no NA NA
569 220.60 radiation 1.0 14400 < th dose independent rect. 20 23
649 220.87 humidity 90.0 43200 < th dose independent rect. 19 2
663 220.97 radiation 40.0 14400 < th dose independent rect. 15 18
715 221.24 humidity 70.0 43200 < th dose dependent rect. 17 1
716 221.25 humidity 90.0 14400 < th dose independent rect. 20 11
724 221.27 wind 9.0 43200 > th dose independent rect. 18 2
737 221.33 radiation 1.0 14400 > th dose independent no NA NA
738 221.33 radiation 1.0 14400 > th dose independent rect. 4 15
803 221.39 humidity 90.0 14400 > th dose independent rect. 5 2
816 221.41 wind 5.0 43200 > th dose independent rect. 5 1
841 221.57 radiation 1.0 14400 < th dose independent rect. 7 14
843 221.57 radiation 1.0 14400 < th dose dependent rect. 16 12
846 221.58 radiation 1.0 14400 < th dose dependent rect. 16 10
859 221.61 radiation 1.0 14400 < th dose independent rect. 7 19
872 221.67 wind 9.0 43200 < th dose independent rect. 18 2
881 221.71 atmosphere 1005.0 43200 > th dose independent rect. 16 1
885 221.72 radiation 1.0 14400 < th dose dependent rect. 16 19
890 221.75 radiation 1.0 14400 < th dose dependent rect. 16 5