BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0152200 Os12g0152200|Os12g0152200
(419 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G05970.1 | chr2:2308651-2309784 REVERSE LENGTH=378 59 3e-09
AT4G22060.1 | chr4:11687620-11688819 FORWARD LENGTH=400 59 6e-09
AT4G17565.1 | chr4:9782508-9783644 REVERSE LENGTH=379 55 7e-08
AT4G22660.1 | chr4:11914981-11916171 REVERSE LENGTH=397 55 8e-08
AT4G22180.1 | chr4:11738574-11739782 FORWARD LENGTH=403 54 2e-07
AT1G49360.1 | chr1:18267338-18269423 REVERSE LENGTH=482 54 2e-07
AT3G22345.1 | chr3:7899215-7900219 FORWARD LENGTH=335 54 2e-07
AT2G03560.1 | chr2:1079639-1081376 FORWARD LENGTH=454 53 3e-07
AT2G33200.1 | chr2:14069541-14070671 FORWARD LENGTH=377 52 7e-07
>AT2G05970.1 | chr2:2308651-2309784 REVERSE LENGTH=378
Length = 377
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 8/133 (6%)
Query: 1 MDTPAAADWSELPADVLGLVLLELEFPDLFRSAAVCKLWRATARDIRRLGLYSRAQTPCL 60
++T A WSEL DVL V L F DL R+ +VC W + +R + ++ Q P L
Sbjct: 2 IETNKKASWSELCPDVLRCVFELLSFSDLNRTRSVCSSWHSASRHC----VPTQNQIPWL 57
Query: 61 LY----TTAAAGPRAAVLYSLADKTTSYTVPLPDPPIAERHIVGSSHGWLVTADHRSELH 116
+ + VL+ D+ + Y + + + W++ D L+
Sbjct: 58 ILFPRNNVNNNNNNSCVLFVPDDRDSLYKTKDLGVGFMLSNCLATYGSWILMMDRLCNLN 117
Query: 117 LLNPATGEQLDLP 129
+LNP TGE++DLP
Sbjct: 118 ILNPLTGEKIDLP 130
>AT4G22060.1 | chr4:11687620-11688819 FORWARD LENGTH=400
Length = 399
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 10/137 (7%)
Query: 1 MDTPA----AADWSELPADVLGLVLLELEFPDLFRSAAVCKLWRATARDIRRLGLYSRAQ 56
MD P+ + WS+LP D+L +V L F D R+ +VC W +R Q
Sbjct: 1 MDPPSLMSDGSSWSKLPLDLLIMVFERLGFVDFQRTKSVCLAWLYASR-----MSAPNKQ 55
Query: 57 TPCLLYTTAAAGPRAAVLYSLADKTTSYTVPLPDPPIAERHIVGSSHGWLVTADHRSELH 116
P L+ G +L++ +K Y + A H + WL D R +L+
Sbjct: 56 IPWLI-MFPEKGKDFCLLFNSEEKEKIYRIQNLGVEFANSHCLAIYGSWLFMRDPRYKLY 114
Query: 117 LLNPATGEQLDLPPVAT 133
++N T E+++LP V +
Sbjct: 115 IMNLFTRERINLPSVES 131
>AT4G17565.1 | chr4:9782508-9783644 REVERSE LENGTH=379
Length = 378
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Query: 9 WSELPADVLGLVLLELEFPDLFRSAAVCKLWRATARDIRRLGLYSRAQTPCLLY---TTA 65
WSEL D+L + +L F +L R+ VC+ W + +R + R Q P ++ +
Sbjct: 18 WSELCPDLLRSIFEQLSFTNLNRAKLVCRSWNSASRGC----VPKRNQIPWMILFPQKSE 73
Query: 66 AAGPRAAVLYSLADKTTSYTVPLPDPPIAERHIVGSSHGWLVTADHRSELHLLNPATGEQ 125
VL+ D Y A+ + + WL+ +H L++LNP T E+
Sbjct: 74 NNSSNNCVLFVPDDNDKVYKTRDLGVDFAQSICLATYGSWLLMFNHLRNLYILNPLTLER 133
Query: 126 LDLPPVATIE 135
+DLP +I
Sbjct: 134 IDLPHSTSIN 143
>AT4G22660.1 | chr4:11914981-11916171 REVERSE LENGTH=397
Length = 396
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 14/165 (8%)
Query: 9 WSELPADVLGLVLLELEFPDLFRSAAVCKLWRATARDIRRLGLYSRAQTPCLLY----TT 64
WS+LP D+L LV L F + ++ +VC W + ++ + Q P L+
Sbjct: 10 WSDLPLDLLNLVFKRLSFANFRQAKSVCSSWYSASKQS-----VPKNQIPWLMLFPKDKN 64
Query: 65 AAAGPRAAVLYSLADKTTSYTVPLPDPPIAERHIVGSSHGWLVTADHRSELHLLNPATGE 124
+ ++ DK Y A+ + + WL+ D + L++LNP T E
Sbjct: 65 NNKNSSCTIFFNPEDKDQLYQTQDLGVEFAKSVCLATYGSWLLMQDSKYNLYILNPFTYE 124
Query: 125 QLDLPP-----VATIEHVRPLYDDAGNLNNYKLVYYDGGGNSHRS 164
++ LP V ++ + + DD +++ V G N+ R+
Sbjct: 125 KIGLPAIESQQVGMVKVDQTIDDDFLTFDDHNHVKLFKGNNTVRT 169
>AT4G22180.1 | chr4:11738574-11739782 FORWARD LENGTH=403
Length = 402
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 12/145 (8%)
Query: 2 DTPAAADWSELPADVLGLVLLELEFPDLFRSAAVCKLWRATARDIRRLGLYSRAQTPCLL 61
DTP + WSELP D+L V L + + R+ +VC W + +R + Q P L+
Sbjct: 16 DTPNS--WSELPLDLLTAVFERLSYANFQRAKSVCSSWHSGSRQSVPI------QIPWLI 67
Query: 62 YTTAAAGPRAAVLYSLADKTTSYTVPLPDPPIAERHIVGSSHGWLVTADHRSELHLLNPA 121
+ L++ +K Y + ++ + WL+ D L++LN
Sbjct: 68 LFPEYDNNNSCTLFNPEEKGQVYKMKDLGVEFSKSVCTATYGSWLLMRDPLYNLYILNLF 127
Query: 122 TGEQLDLPP----VATIEHVRPLYD 142
T E+++LPP + ++ R +YD
Sbjct: 128 THERVNLPPFESQLGMVKIERTIYD 152
>AT1G49360.1 | chr1:18267338-18269423 REVERSE LENGTH=482
Length = 481
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 10/130 (7%)
Query: 12 LPADVLGLVLLELEFPDLFRSAAVCKLWRATARDIRRLGLYSRAQTPCLLYTTAAAGPRA 71
LP+D++ L+L L F D RS+ VCK W A +R +++ LLY A
Sbjct: 111 LPSDLVRLILSRLSFKDNIRSSTVCKAWGDIAASVR-----VKSRRCWLLYHDAFQDKGV 165
Query: 72 AV-LYSLADKTTSYTVPLPDPPIAERHIVGSSHGWLVTADHRS---ELHLLNPATGEQLD 127
+ + +K + + LP+ + I+ S GWL+ D S +++ NP T E++D
Sbjct: 166 SYGFFDPVEKKKTKEMNLPELSKSS-GILYSKDGWLLMNDSLSLIADMYFFNPFTRERID 224
Query: 128 LPPVATIEHV 137
LP +E V
Sbjct: 225 LPRNRIMESV 234
>AT3G22345.1 | chr3:7899215-7900219 FORWARD LENGTH=335
Length = 334
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 118/296 (39%), Gaps = 35/296 (11%)
Query: 8 DWSELPA-DVLGLVLLELEFPDLFRSAAVCKLWRATARDIRRLGLYSRAQTPCLLYTTAA 66
+WS + A D++ + L F + R+ ++ W +TA Y + TP L+ +
Sbjct: 17 EWSPVLAPDLIRSIFERLNFAEFHRAMSISLDWYSTAE-----LCYRQNPTPWLILFSNY 71
Query: 67 AGPRAAVLYSLADKTTSYTVPLPDPPIAERHIVGSSHGWLVTADHRSELHLLNPATGEQL 126
+ L DKT Y + + +S WL+ DHR++ +LLN T E++
Sbjct: 72 RHISCRLFDPLHDKT--YVIRDLGFDFHRSCCLATSGSWLLMLDHRTDFYLLNLFTRERI 129
Query: 127 DLPPVATIEHVRPLYDDAGNLNNYKLVYYDGGGNSHRSNDDDMHTVTHPPETFREFLYLK 186
LP + I+ + ++ G + K Y G S+ S + +
Sbjct: 130 CLPTLEAIDGWQMKFERVGESDFLKTFTYREGYRSYSSGLSTKVVIEN------------ 177
Query: 187 AVISSDPSRGDDYTVMLIHHPYLQLSFARSGDKKWTWIKMGNN-ECEWFEDCIYHDGVFY 245
AV+ D R DY V+ + +K W I++ N EC D ++ + Y
Sbjct: 178 AVLWVD-ERSRDYLVVWSIECFFAYHKKGDNNKTWKVIQLKKNEEC---SDIVFRESKLY 233
Query: 246 AQTVHGAIHAIDVVSAS----SSFTHR---LILKPTMGELGTLYIVRTTEGDILQV 294
+ I D S S +SFT + L L P + G L I T G++L +
Sbjct: 234 VLNPNLNITVFDFSSGSPNECASFTSQDIGLTLYP-LSCFGHLVI--TLSGEVLLI 286
>AT2G03560.1 | chr2:1079639-1081376 FORWARD LENGTH=454
Length = 453
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 93/219 (42%), Gaps = 26/219 (11%)
Query: 8 DWSELPADVLGLVLLELEFPDLFRSAAVCKLWRATARDIRRLGLYSRAQTPC-LLYTTAA 66
DWS+L D+L ++ L D +R+ VC W + + + R P ++Y
Sbjct: 21 DWSKLCPDILRKIIESLSSLDFYRAKIVCSDWYSVWKTCVK-----RPLRPWRIIYRAKY 75
Query: 67 AGPRAAVLYSL-ADKTTSYTVPLPDPPIAERHIVGSSHGWLVTADHRSELHLLNPATGEQ 125
+ +L+ DK V + D E + + SS WL+ AD R + +++N TG++
Sbjct: 76 YISTSLMLFDPDEDKIYKNLVGVSD----ESYRLASSGNWLLMADSRLDFYIVNLLTGKR 131
Query: 126 LDLPPV-ATIEHVRPLYDDAGNLNNYKLVYYDGGGNSHRSNDDDMHTVTHPPETFREFLY 184
++LPP+ + I + + + + + +D NS R ++ ++
Sbjct: 132 INLPPMESKIRGAQARFVQSKYFYKSRYICFD-NCNSIRISEKEVFESKRA--------- 181
Query: 185 LKAVISSDPSRGDDYTVMLIHHPYLQLSFARSGDKKWTW 223
AV+ D GD + + + YL + GD W W
Sbjct: 182 --AVLWIDERTGDYFVAWIFNKHYLFTH--KKGDDSWCW 216
>AT2G33200.1 | chr2:14069541-14070671 FORWARD LENGTH=377
Length = 376
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 8 DWSELPADVLGLVLLELEFPDLFRSAAVCKLWRATARDIRRLGLYSRAQTPCLLYTTAAA 67
DWS+L D+L L+L L + D R+ VC W + +R R + + +T+
Sbjct: 7 DWSKLCHDILRLILESLHYKDYHRARTVCSNWYTASTTCKRPLYPWRIKFNKI--STSLF 64
Query: 68 GPRAAVLYSLADKTTSYTVPLPDPPIAERHIVGSSHGWLVTADHRSELHLLNPATGEQLD 127
PR ++ + P ++R+++ S W + D E +LLN T E+++
Sbjct: 65 DPREDKIHEIQH---------PGIEFSDRNVLASCSNWFLMVDSGLEFYLLNAFTRERIN 115
Query: 128 LPPVAT 133
LP + +
Sbjct: 116 LPSMES 121
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,999,830
Number of extensions: 434653
Number of successful extensions: 1234
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 1235
Number of HSP's successfully gapped: 10
Length of query: 419
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 318
Effective length of database: 8,337,553
Effective search space: 2651341854
Effective search space used: 2651341854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)