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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0150700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.82 (0.0134) R2 : 0.00615
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0474 (0.0282) R2dN8 : 0.00794 R2N8 : 0.00615
σ : 0.253
deviance : 29.27
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
27.83 0.246 2.65 0.921 0.0589 8.05 0.0327 -49.4 0.0465 11.1 995 1442 -- --
28.92 0.252 2.82 -0.0631 0.0632 -0.027 0.0583 -- 0.0406 9.95 995 1442 -- --
27.84 0.246 2.65 0.922 0.0587 8.05 -- -49.4 0.0465 11.2 995 1440 -- --
27.99 0.246 2.82 -0.02 0.0424 -0.394 -- -- 0.0676 10.9 996.6 1190 -- --
27.98 0.246 2.67 0.8 -- 8.02 -- -49.4 0.0461 -- 995.6 1364 -- --
28.92 0.252 2.82 -0.0628 0.063 -- 0.0572 -- 0.0405 9.99 -- -- -- --
28.93 0.252 2.82 -0.0604 0.0626 -- -- -- 0.0408 10.2 -- -- -- --
28.03 0.247 2.81 -0.0577 -- -0.441 -- -- 0.0445 -- 996.6 1191 -- --
27.92 0.246 2.81 -- 0.062 -0.49 -- -- 0.056 10.9 996.6 1190 -- --
29.17 0.252 2.82 -0.0613 -- -- -- -- 0.0406 -- -- -- -- --
29.03 0.252 2.82 -- 0.0629 -- -- -- 0.0475 10.3 -- -- -- --
28.16 0.247 2.81 -- -- -0.493 -- -- 0.0563 -- 996.6 1190 -- --
29.27 0.253 2.82 -- -- -- -- -- 0.0474 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 23.94 atmosphere 1000 10 < th dose independent rect. 7 1
9 23.94 atmosphere 1000 10 < th dose dependent rect. 7 1
45 26.28 atmosphere 1005 90 < th dose independent rect. 20 1
47 26.48 humidity 90 90 > th dose dependent rect. 20 1
49 26.56 temperature 25 270 > th dose dependent rect. 4 2
50 26.57 atmosphere 1000 10 < th dose independent rect. 4 5
52 26.58 atmosphere 1000 270 < th dose independent rect. 4 1
55 26.58 atmosphere 1000 270 < th dose dependent rect. 4 1
59 26.60 atmosphere 1000 10 < th dose dependent rect. 4 5
84 26.86 radiation 30 90 > th dose independent rect. 7 1
116 26.90 temperature 25 270 > th dose independent rect. 5 1
145 27.05 temperature 25 10 > th dose independent rect. 5 3
156 27.10 radiation 30 90 > th dose dependent rect. 7 1
220 27.38 wind 1 90 < th dose independent rect. 9 2
230 27.42 atmosphere 1000 10 < th dose dependent rect. 2 7
232 27.44 temperature 25 30 > th dose independent rect. 7 1
234 27.44 atmosphere 995 1440 > th dose independent rect. 17 1
244 27.46 wind 1 30 < th dose independent rect. 8 4
274 27.52 temperature 25 90 > th dose dependent rect. 7 1
296 27.55 humidity 70 10 < th dose dependent rect. 10 1
301 27.56 humidity 90 90 > th dose independent rect. 21 1
306 27.57 humidity 90 10 > th dose independent rect. 22 1
325 27.59 temperature 25 10 > th dose dependent rect. 5 3
328 27.59 temperature 25 10 > th dose dependent rect. 3 5
335 27.59 atmosphere 1000 720 < th dose dependent rect. 20 12
341 27.60 temperature 25 10 > th dose dependent rect. 7 1
365 27.64 radiation 40 30 > th dose dependent rect. 10 1
391 27.67 atmosphere 1000 720 < th dose dependent rect. 23 9
439 27.71 atmosphere 995 1440 > th dose independent rect. 4 19
446 27.72 atmosphere 995 1440 > th dose independent rect. 17 6
449 27.72 temperature 25 10 > th dose dependent rect. 5 1
458 27.73 humidity 70 30 < th dose independent rect. 9 2
462 27.73 atmosphere 995 1440 > th dose independent rect. 7 16
472 27.73 radiation 1 720 < th dose dependent rect. 21 9
474 27.74 atmosphere 995 1440 > th dose independent rect. 10 13
485 27.75 atmosphere 995 1440 > th dose independent rect. 10 8
494 27.76 atmosphere 995 1440 > th dose independent rect. 10 15
495 27.76 atmosphere 995 1440 > th dose independent rect. 10 23
524 27.78 atmosphere 995 1440 > th dose independent rect. 15 8
526 27.78 atmosphere 995 1440 > th dose independent rect. 7 11
527 27.78 humidity 70 30 < th dose independent rect. 16 19
543 27.79 atmosphere 995 1440 > th dose independent rect. 4 14
546 27.79 atmosphere 995 1440 > th dose independent rect. 10 19
548 27.79 atmosphere 995 1440 > th dose independent rect. 20 22
558 27.80 radiation 30 10 > th dose independent rect. 10 1
567 27.80 atmosphere 995 1440 > th dose independent rect. 22 20
597 27.81 atmosphere 995 1440 > th dose independent rect. 17 12
633 27.82 atmosphere 995 1440 > th dose independent rect. 7 22
637 27.82 wind 1 30 < th dose dependent rect. 10 2
653 27.82 humidity 70 30 < th dose dependent rect. 16 19
654 27.83 atmosphere 995 1440 > th dose independent sin 13 NA
657 27.83 atmosphere 995 1440 > th dose independent sin 0 NA
659 27.83 atmosphere 995 1440 > th dose independent no NA NA
660 27.83 atmosphere 995 1440 < th dose independent sin 15 NA
675 27.83 atmosphere 995 1440 < th dose independent no NA NA
676 27.83 atmosphere 995 1440 < th dose independent rect. 15 2
917 27.83 atmosphere 995 1440 > th dose independent rect. 16 23
919 27.83 atmosphere 995 1440 > th dose independent rect. 24 23
935 27.83 atmosphere 995 1440 < th dose independent rect. 17 23
943 27.83 atmosphere 995 1440 < th dose dependent sin 15 NA
959 27.83 atmosphere 995 1440 < th dose dependent no NA NA
963 27.83 atmosphere 995 1440 < th dose dependent rect. 15 2