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Os12g0149000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.87 (0.042) R2 : 0.713
β1 : -- (--) R2dD : -- R2D : --
β2 : 5.32 (0.17) R2dC : 1.5 R2C : 0.0616
β3 : -2.8 (0.144) R2dE : 0.57 R2E : -0.813
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.733 (0.0882) R2dN8 : 0.0571 R2N8 : 0.0504
σ : 0.784
deviance : 283.22
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C
peak time of C : 6.16
E
wheather : temperature
threshold : 19.35
memory length : 293
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19.1
open length of G : 15.5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
264.08 0.764 6.82 0.0898 4.85 -2.41 0.829 2.22 -0.613 6.28 20.07 306 18.9 15.8
276.29 0.774 6.85 -0.068 5.13 -2.56 2.46 -- -0.662 6.25 19.7 290 19 15.9
265.07 0.758 6.82 0.119 4.83 -2.41 -- 2.52 -0.596 6.26 20.03 308 18.9 15.8
283.61 0.784 6.87 -0.0629 5.19 -2.68 -- -- -0.733 6.19 19.5 290 19.2 15.5
548.26 1.09 6.84 0.675 -- -4.5 -- 3.09 0.0224 -- 19.71 850 3.5 14.2
483.43 1.03 6.97 -0.767 2.85 -- 1.94 -- -0.968 6.71 -- -- -- --
492.95 1.04 6.97 -0.735 2.86 -- -- -- -0.974 6.71 -- -- -- --
374.82 0.902 6.97 -0.404 -- -3.01 -- -- -0.867 -- 19.13 402 7.95 15
283.22 0.784 6.87 -- 5.32 -2.8 -- -- -0.733 6.16 19.35 293 19.1 15.5
919.51 1.42 7.03 -0.67 -- -- -- -- -0.917 -- -- -- -- --
507.21 1.05 6.96 -- 2.85 -- -- -- -0.892 6.73 -- -- -- --
353 0.875 6.97 -- -- -2.91 -- -- -0.875 -- 19.3 322 8.12 15.9
931.34 1.42 7.02 -- -- -- -- -- -0.843 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 272.12 temperature 20.0 270 > th dose independent rect. 19 16
8 288.06 temperature 15.0 270 > th dose dependent rect. 20 14
23 301.80 temperature 20.0 270 > th dose independent rect. 5 20
29 308.17 temperature 20.0 270 > th dose independent rect. 19 6
87 327.88 wind 5.0 43200 > th dose dependent rect. 1 1
91 328.73 humidity 80.0 43200 > th dose independent rect. 5 4
98 330.15 temperature 15.0 270 > th dose dependent rect. 19 6
101 330.40 humidity 80.0 43200 > th dose independent rect. 4 6
104 331.36 humidity 80.0 43200 < th dose independent rect. 3 7
108 331.70 wind 9.0 43200 > th dose independent rect. 1 1
113 332.32 wind 5.0 43200 > th dose independent rect. 1 1
114 332.42 humidity 90.0 43200 > th dose dependent rect. 12 3
115 332.75 humidity 80.0 43200 < th dose independent rect. 5 4
122 333.00 humidity 70.0 43200 > th dose independent rect. 20 16
124 333.07 humidity 70.0 43200 > th dose independent rect. 23 13
133 333.43 radiation 1.0 43200 < th dose dependent rect. 4 1
137 333.69 wind 7.0 43200 < th dose independent rect. 1 2
151 334.29 humidity 90.0 43200 > th dose independent rect. 12 2
177 335.34 radiation 1.0 43200 < th dose dependent rect. 19 10
178 335.37 humidity 70.0 43200 > th dose independent sin 7 NA
179 335.37 wind 7.0 43200 > th dose dependent rect. 21 8
182 335.45 humidity 70.0 43200 < th dose independent rect. 22 14
192 335.68 wind 9.0 43200 > th dose independent rect. 21 5
199 335.81 humidity 90.0 43200 < th dose independent rect. 12 1
204 335.92 wind 9.0 43200 > th dose independent rect. 21 2
248 336.99 wind 9.0 43200 > th dose dependent rect. 21 2
250 337.00 atmosphere 1010.0 43200 < th dose independent rect. 23 1
251 337.01 humidity 70.0 43200 < th dose independent sin 7 NA
256 337.08 radiation 30.0 43200 < th dose independent rect. 4 3
263 337.26 wind 7.0 43200 < th dose independent rect. 22 7
271 337.33 radiation 1.0 43200 < th dose independent rect. 18 11
286 337.63 precipitation 0.1 43200 > th dose independent rect. 6 7
287 337.65 atmosphere 995.0 43200 > th dose independent rect. 6 2
291 337.67 precipitation 0.1 43200 > th dose dependent rect. 6 7
294 337.73 atmosphere 1005.0 43200 > th dose dependent rect. 23 1
310 338.02 wind 9.0 43200 < th dose independent rect. 21 3
325 338.20 precipitation 0.1 43200 < th dose independent rect. 6 7
329 338.20 precipitation 0.1 43200 < th dose dependent rect. 6 7
332 338.28 atmosphere 1010.0 43200 > th dose independent rect. 23 1
342 338.52 radiation 1.0 43200 < th dose independent rect. 6 10
345 338.55 radiation 1.0 43200 > th dose independent rect. 6 10
350 338.62 radiation 1.0 43200 > th dose independent rect. 18 11
354 338.67 humidity 80.0 43200 < th dose dependent rect. 23 14
364 338.80 temperature 20.0 43200 < th dose independent rect. 6 2
366 338.81 temperature 20.0 43200 > th dose independent rect. 6 2
397 339.18 atmosphere 1010.0 43200 > th dose independent rect. 20 1
400 339.20 radiation 1.0 43200 < th dose independent rect. 14 2
405 339.24 radiation 1.0 43200 > th dose independent rect. 14 2
435 339.42 temperature 20.0 43200 < th dose independent rect. 5 4
455 339.55 precipitation 0.1 43200 > th dose independent rect. 9 2
456 339.55 atmosphere 995.0 43200 > th dose independent rect. 5 4
458 339.55 precipitation 0.1 43200 > th dose dependent rect. 9 2
467 339.59 humidity 80.0 43200 < th dose dependent sin 6 NA
468 339.59 temperature 10.0 43200 > th dose dependent rect. 12 1
553 340.04 atmosphere 995.0 43200 > th dose independent rect. 4 6
555 340.04 humidity 90.0 43200 < th dose dependent rect. 8 1
572 340.12 radiation 1.0 43200 > th dose independent rect. 6 4
588 340.18 radiation 1.0 43200 < th dose independent rect. 6 4
590 340.19 radiation 1.0 43200 > th dose independent rect. 6 1
599 340.23 radiation 1.0 43200 < th dose dependent rect. 6 1
603 340.26 radiation 1.0 43200 < th dose independent rect. 6 1
631 340.38 temperature 30.0 43200 < th dose dependent rect. 8 5
637 340.40 temperature 30.0 43200 < th dose dependent rect. 9 1
686 340.54 temperature 30.0 43200 < th dose dependent rect. 11 1
705 340.58 atmosphere 1010.0 43200 < th dose independent sin 14 NA
745 340.66 atmosphere 1015.0 43200 < th dose dependent rect. 23 1
831 340.90 atmosphere 1010.0 43200 > th dose independent sin 14 NA
832 340.90 precipitation 0.1 43200 > th dose independent rect. 9 4
840 340.90 precipitation 0.1 43200 > th dose dependent rect. 9 4
868 340.96 atmosphere 995.0 43200 > th dose independent rect. 3 9