Os12g0143400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RED-like, C-terminal family protein.
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Os12g0143400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RED-like, C-terminal family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 167.89 | 0.609 | 6.69 | 1.36 | 0.448 | -1.19 | 0.71 | -0.591 | -0.337 | 14.4 | 21.62 | 1569 | -- | -- |
| 167.89 | 0.603 | 6.66 | 1.45 | 0.429 | -1.08 | 0.673 | -- | -0.285 | 14.3 | 22.1 | 1501 | -- | -- |
| 169.46 | 0.606 | 6.68 | 1.37 | 0.455 | -1.17 | -- | -0.543 | -0.329 | 14.5 | 21.8 | 1574 | -- | -- |
| 169.54 | 0.606 | 6.66 | 1.45 | 0.427 | -1.07 | -- | -- | -0.287 | 14.4 | 22.1 | 1494 | -- | -- |
| 177.54 | 0.621 | 6.68 | 1.29 | -- | -1.08 | -- | -0.41 | -0.324 | -- | 22.2 | 1140 | -- | -- |
| 209.73 | 0.679 | 6.74 | 1.03 | 0.461 | -- | 0.631 | -- | -0.644 | 14.4 | -- | -- | -- | -- |
| 211.17 | 0.681 | 6.74 | 1.05 | 0.464 | -- | -- | -- | -0.64 | 14.5 | -- | -- | -- | -- |
| 177.91 | 0.621 | 6.67 | 1.4 | -- | -1.06 | -- | -- | -0.293 | -- | 22.26 | 1140 | -- | -- |
| 219.49 | 0.69 | 6.68 | -- | 0.344 | -0.699 | -- | -- | -0.464 | 14.7 | 22.4 | 1275 | -- | -- |
| 223.83 | 0.699 | 6.75 | 1.03 | -- | -- | -- | -- | -0.652 | -- | -- | -- | -- | -- |
| 240.34 | 0.725 | 6.77 | -- | 0.444 | -- | -- | -- | -0.757 | 14.5 | -- | -- | -- | -- |
| 225.28 | 0.699 | 6.72 | -- | -- | -0.747 | -- | -- | -0.522 | -- | 22.3 | 1009 | -- | -- |
| 251.94 | 0.741 | 6.77 | -- | -- | -- | -- | -- | -0.766 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 165.85 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 2 | 167.60 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 6 | 168.40 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 15 | 168.87 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 24 | 169.20 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 47 | 169.55 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 116 | 170.27 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 13 | NA |
| 149 | 170.66 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 150 | 170.68 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 151 | 170.68 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 181 | 170.92 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 201 | 171.05 | wind | 1.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 310 | 172.14 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 16 | 22 |
| 327 | 172.24 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 329 | 172.27 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 331 | 172.28 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 341 | 172.35 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 344 | 172.39 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 347 | 172.42 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 433 | 172.78 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 18 |
| 448 | 172.82 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 620 | 173.69 | wind | 1.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 694 | 174.06 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 776 | 174.58 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 869 | 175.08 | temperature | 15.0 | 1440 | > th | dose dependent | sin | 11 | NA |
| 964 | 175.57 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 989 | 175.72 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 8 | 6 |