BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0143400 Os12g0143400|Os12g0143400
(536 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G26460.1 | chr2:11255049-11258913 REVERSE LENGTH=586 563 e-161
>AT2G26460.1 | chr2:11255049-11258913 REVERSE LENGTH=586
Length = 585
Score = 563 bits (1452), Expect = e-161, Method: Compositional matrix adjust.
Identities = 309/539 (57%), Positives = 365/539 (67%), Gaps = 55/539 (10%)
Query: 24 ETPRYRDRAKECREDQNLDYEPTELGSFHAVAPPGA-DLRLADVHKISIEKSKYLGGDLE 82
+ P+YRDRAKE RE+QN DY+P+EL SFHAVAPPGA D+R AD KISIE SKYLGGD+E
Sbjct: 24 DNPKYRDRAKERRENQNPDYDPSELSSFHAVAPPGAVDIRAADALKISIENSKYLGGDVE 83
Query: 83 HTHLVKGLDYALLHKVRSEIEKKPDAEDGKDTQTRSTKEDQAVSFRTATAK--------- 133
HTHLVKGLDYALL+KVRSEI KKPD EDG +T + KEDQ V+FRT AK
Sbjct: 84 HTHLVKGLDYALLNKVRSEIVKKPDGEDGDGGKTSAPKEDQRVTFRTIAAKSVYQWIVKP 143
Query: 134 ---------------------EDGLTNDIPTTLHRSKADCAVPEEMVTVSVDGSVLDRIA 172
E G T+DIPTTL+RSKADC VPEE VTV+VDGSVLDRIA
Sbjct: 144 QTIIKSNEMFLPGRMTFVYDMEGGYTHDIPTTLYRSKADCPVPEEFVTVNVDGSVLDRIA 203
Query: 173 KIMSYLRXXXXXXXXXXXXXERDTKGNNSLASGDYDEVARPG--QTGSSL----KHQFQK 226
KIMSYLR E+D KG S + DYDE + GSS+ +
Sbjct: 204 KIMSYLRLGSSGKVLKKKKKEKDGKGKMSTIANDYDEDDNKSKIENGSSVNISDREVLPP 263
Query: 227 DMXXXXXXRNNNLSKNEEQSIPVARADEDDIFVGDGVDYSVPNKEMSHSPVSEDMDESPH 286
+ +LS +E+ PVAR D+DDIFVG+GVDY+VP K+++ SP+SEDM+ESP
Sbjct: 264 PPPLPPGINHLDLSTKQEEP-PVARTDDDDIFVGEGVDYTVPGKDVTQSPISEDMEESPR 322
Query: 287 NHQKQSYFTE-------------EKPVYGPIPPSDPAQAWPQTNGYDAIQAQMVAAGYQG 333
+ +K SYF E +P YGP+ PS Q W + Y A+Q Q +A GY G
Sbjct: 323 DKEKVSYFDEPAYGPVQEKVPYFAEPAYGPVQPS-AGQEWQDMSAYGAMQTQGLAPGYPG 381
Query: 334 EWSGYQYGXXXXXXXXXXXXXSTQDYDVLADPNIAQDPRLMTQADKDRGLGSVFKRDDER 393
EW YQY + Y+V + ++ DP+LM+Q +KDRGLGSVFKRDD+R
Sbjct: 382 EWQEYQYAEQTGYQEQYLQP-GMEGYEVQPETDVLLDPQLMSQEEKDRGLGSVFKRDDQR 440
Query: 394 LKQLREKDSREKDPNFISDSYSECYPGYQEYNHEIAGSDEEDDLSKMDMGGRAKGRLHRW 453
L+QLRE D+REKDP F+S+SYSECYPGYQEYNHEI GSDEE DLSKMDMGG+AKG LHRW
Sbjct: 441 LQQLRESDAREKDPTFVSESYSECYPGYQEYNHEIVGSDEEPDLSKMDMGGKAKGGLHRW 500
Query: 454 DFETEEEWAKYNDQKEAMPKAAFQFGVKMQDGRKTRKQN--KDQKLTNDLHKINKILAR 510
DFETEEEW KYN+QKEAMPKAAFQFGVKMQDGRKTRKQN +DQKL N+LH+INKIL R
Sbjct: 501 DFETEEEWEKYNEQKEAMPKAAFQFGVKMQDGRKTRKQNRDRDQKLNNELHQINKILTR 559
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.310 0.129 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,255,078
Number of extensions: 489634
Number of successful extensions: 1154
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1149
Number of HSP's successfully gapped: 2
Length of query: 536
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 433
Effective length of database: 8,282,721
Effective search space: 3586418193
Effective search space used: 3586418193
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 114 (48.5 bits)