Os12g0143300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Excinuclease ABC, C subunit, N-terminal domain containing protein.
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Os12g0143300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Excinuclease ABC, C subunit, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.53 | 0.208 | 11.1 | -0.0307 | 0.87 | -0.548 | 0.724 | -1.45 | 0.369 | 2.92 | 23.4 | 23 | -- | -- |
| 21.87 | 0.219 | 11.1 | -0.209 | 0.857 | -0.367 | 0.277 | -- | 0.328 | 3 | 24.17 | 10 | -- | -- |
| 20.87 | 0.214 | 11.1 | -0.102 | 0.867 | -0.484 | -- | -0.953 | 0.354 | 2.98 | 23.4 | 23 | -- | -- |
| 22.12 | 0.22 | 11.1 | -0.215 | 0.858 | -0.367 | -- | -- | 0.326 | 3.01 | 24.2 | 10 | -- | -- |
| 54.74 | 0.346 | 11 | 0.0466 | -- | 0.544 | -- | -0.12 | 0.521 | -- | 28.92 | 2599 | -- | -- |
| 23.8 | 0.229 | 11.1 | -0.125 | 0.803 | -- | 0.282 | -- | 0.389 | 3.16 | -- | -- | -- | -- |
| 24.06 | 0.23 | 11.1 | -0.131 | 0.804 | -- | -- | -- | 0.387 | 3.16 | -- | -- | -- | -- |
| 53.22 | 0.34 | 11 | 0.044 | -- | 0.754 | -- | -- | 0.519 | -- | 35.1 | 10 | -- | -- |
| 23.23 | 0.226 | 11.1 | -- | 0.842 | -0.285 | -- | -- | 0.362 | 3.04 | 24.2 | 10 | -- | -- |
| 60.87 | 0.365 | 11.1 | -0.0969 | -- | -- | -- | -- | 0.408 | -- | -- | -- | -- | -- |
| 24.52 | 0.232 | 11.1 | -- | 0.802 | -- | -- | -- | 0.402 | 3.16 | -- | -- | -- | -- |
| 53.22 | 0.34 | 11.1 | -- | -- | 0.72 | -- | -- | 0.502 | -- | 35 | 14 | -- | -- |
| 61.11 | 0.365 | 11.1 | -- | -- | -- | -- | -- | 0.419 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.34 | temperature | 25 | 10 | < th | dose dependent | sin | 14 | NA |
| 6 | 18.53 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 9 |
| 11 | 18.56 | temperature | 25 | 90 | < th | dose dependent | rect. | 16 | 11 |
| 20 | 18.61 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 13 |
| 58 | 18.84 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 5 |
| 70 | 18.88 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 1 |
| 102 | 18.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 146 | 19.06 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 1 |
| 152 | 19.07 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 5 |
| 195 | 19.14 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 3 |
| 198 | 19.14 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 6 |
| 222 | 19.18 | temperature | 10 | 10 | > th | dose dependent | sin | 13 | NA |
| 289 | 19.26 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 10 |
| 310 | 19.29 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 423 | 19.45 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 546 | 19.57 | humidity | 70 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 547 | 19.57 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 548 | 19.57 | humidity | 70 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 553 | 19.57 | humidity | 70 | 14400 | < th | dose dependent | rect. | 20 | 13 |
| 557 | 19.58 | humidity | 70 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 558 | 19.58 | humidity | 70 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 563 | 19.58 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 16 | 7 |
| 589 | 19.60 | humidity | 70 | 14400 | < th | dose dependent | rect. | 6 | 3 |
| 639 | 19.63 | humidity | 50 | 14400 | > th | dose independent | rect. | 1 | 9 |
| 648 | 19.64 | humidity | 50 | 14400 | > th | dose independent | rect. | 3 | 7 |
| 649 | 19.64 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 662 | 19.65 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 695 | 19.68 | wind | 1 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 740 | 19.71 | humidity | 70 | 14400 | < th | dose independent | rect. | 20 | 13 |
| 745 | 19.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 9 |
| 751 | 19.72 | humidity | 50 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 752 | 19.72 | humidity | 50 | 14400 | > th | dose independent | rect. | 23 | 11 |
| 772 | 19.73 | humidity | 50 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 774 | 19.73 | humidity | 50 | 14400 | > th | dose independent | rect. | 19 | 15 |
| 787 | 19.74 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 821 | 19.76 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 823 | 19.76 | temperature | 25 | 90 | < th | dose independent | rect. | 16 | 9 |
| 837 | 19.77 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 852 | 19.78 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 861 | 19.78 | humidity | 50 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 871 | 19.78 | humidity | 50 | 43200 | < th | dose dependent | rect. | 19 | 18 |
| 875 | 19.79 | temperature | 20 | 720 | > th | dose dependent | sin | 16 | NA |
| 879 | 19.79 | humidity | 50 | 43200 | < th | dose dependent | rect. | 3 | 10 |
| 959 | 19.81 | humidity | 50 | 43200 | < th | dose dependent | rect. | 6 | 7 |
| 976 | 19.82 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 15 | 6 |
| 980 | 19.82 | humidity | 50 | 43200 | < th | dose dependent | sin | 8 | NA |