BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0143300 Os12g0143300|J065138F13
         (112 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G43210.1  | chr5:17347567-17348379 FORWARD LENGTH=171           87   1e-18
AT2G30350.2  | chr2:12934237-12935742 REVERSE LENGTH=369           48   9e-07

>AT5G43210.1 | chr5:17347567-17348379 FORWARD LENGTH=171
          Length = 170

 Score = 87.4 bits (215), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/111 (45%), Positives = 64/111 (57%), Gaps = 2/111 (1%)

Query: 3   LSATFRSAKIPRALPPKSGEPXXXXXXXXXXXPGNPS-AEAAKGKAALGWCVYLIASS-R 60
           LS TF S K+  + P                 P + S  E +K   +  W VYLI S+  
Sbjct: 5   LSRTFPSVKLRDSNPKAPEFKNLKNSQTQVPIPSSSSPQENSKIPKSKSWSVYLILSTTE 64

Query: 61  ISRTYVGVTTDFPRRLRQHNGELKGGAKASSAGRPWNLACLIEGFVNRSEG 111
             +TYVG+TTDF RRL+QHNGE++GGAKASSAGRPW  AC+I GF   S+ 
Sbjct: 65  PIKTYVGITTDFSRRLKQHNGEIRGGAKASSAGRPWLCACIITGFTCLSQA 115



>AT2G30350.2 | chr2:12934237-12935742 REVERSE LENGTH=369
          Length = 368

 Score = 48.1 bits (113), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query: 63  RTYVGVTTDFPRRLRQHNGELKGGAKASSAGRPWNLACLIEGF 105
           +TY+G T +  RR+RQHNGE+  GA  +   RPW +   I GF
Sbjct: 43  QTYIGFTVNPRRRIRQHNGEITSGAWRTKKKRPWEMVLCIYGF 85



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,134,421
Number of extensions: 69602
Number of successful extensions: 115
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 2
Length of query: 112
Length of database: 11,106,569
Length adjustment: 81
Effective length of query: 31
Effective length of database: 8,885,873
Effective search space: 275462063
Effective search space used: 275462063
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)