Os12g0141800 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0141800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.14	(0.0249)	R²	:	0.306
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	5.31	(0.376)	R²_dE	:	0.304	R²_E	:	0.305
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.0274	(0.0525)	R²_dN8	:	0.000537	R²_N8	:	0.00128
σ	:	0.468
deviance	:	101.18
__

_____

C
peak time of C	:	--
E
wheather	:	atmosphere
threshold	:	996.7
memory length	:	155
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	7.88
open length of G	:	4.88

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
103.66	0.478	3.12	0.14	0.105	2.13	-0.294	17.9	-0.0184	0.89	997.6	223	7.45	5.35
101.24	0.469	3.13	0.0608	0.108	4.84	-0.241	--	0.0177	0.613	996.9	174	7.18	6
100.98	0.468	3.12	0.15	0.106	2.33	--	16.8	-0.0304	0.51	997.2	179	7.55	5.6
100.55	0.467	3.13	0.0727	0.0899	5.31	--	--	-0.0241	1.58	996.7	150	7.88	4.88
101.27	0.469	3.12	0.155	--	2.45	--	16.6	-0.00706	--	997	182	7.62	5.42
144.01	0.563	3.14	0.11	0.0307	--	-0.469	--	-0.0445	0.566	--	--	--	--
144.92	0.564	3.14	0.127	0.0409	--	--	--	-0.0426	3.04	--	--	--	--
101.05	0.468	3.14	0.073	--	5.31	--	--	-0.0184	--	996.8	150	7.86	4.95
100.59	0.467	3.14	--	0.0975	5.35	--	--	-0.0287	0.855	996.7	154	7.88	4.9
145.02	0.563	3.14	0.129	--	--	--	--	-0.0416	--	--	--	--	--
145.35	0.564	3.15	--	0.0434	--	--	--	-0.0568	3.05	--	--	--	--
101.18	0.468	3.14	--	--	5.31	--	--	-0.0274	--	996.7	155	7.88	4.88
145.46	0.563	3.15	--	--	--	--	--	-0.0559	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	118.30	atmosphere	1000	90	< th	dose dependent	rect.	8	6
40	124.44	atmosphere	1000	270	< th	dose dependent	rect.	9	1
47	124.93	atmosphere	1000	720	< th	dose dependent	rect.	7	2
50	125.21	atmosphere	1000	10	< th	dose dependent	rect.	8	2
91	126.16	atmosphere	1000	270	< th	dose independent	rect.	6	8
113	126.65	atmosphere	1000	90	< th	dose independent	rect.	8	6
149	127.79	atmosphere	1000	10	< th	dose dependent	sin	1	NA
196	128.82	humidity	50	90	< th	dose independent	rect.	13	2
197	128.82	humidity	50	90	< th	dose dependent	rect.	13	2
202	128.93	atmosphere	1000	90	< th	dose dependent	rect.	12	2
204	128.94	atmosphere	1000	90	< th	dose independent	rect.	12	1
205	128.94	atmosphere	1000	720	< th	dose dependent	sin	6	NA
241	129.46	atmosphere	1000	10	< th	dose dependent	rect.	2	13
300	130.34	atmosphere	1000	720	< th	dose independent	rect.	3	7
308	130.40	atmosphere	1000	270	< th	dose independent	rect.	9	1
369	131.19	atmosphere	1000	10	< th	dose dependent	rect.	24	15
392	131.45	atmosphere	1000	10	< th	dose independent	rect.	8	2
465	132.10	atmosphere	1000	720	> th	dose independent	rect.	1	8
483	132.25	atmosphere	1000	30	> th	dose independent	rect.	21	23
487	132.28	temperature	25	720	> th	dose dependent	rect.	24	8
575	132.90	atmosphere	1000	270	< th	dose independent	sin	3	NA
580	132.91	temperature	25	30	> th	dose dependent	rect.	20	2
591	132.98	temperature	30	90	> th	dose dependent	rect.	13	1
594	133.00	atmosphere	1000	270	> th	dose independent	sin	3	NA
642	133.19	atmosphere	1000	720	> th	dose independent	rect.	21	16
670	133.31	temperature	25	720	> th	dose dependent	rect.	22	11
680	133.41	atmosphere	1000	720	< th	dose independent	sin	7	NA
708	133.58	atmosphere	1000	720	> th	dose independent	sin	7	NA
763	133.82	atmosphere	1000	720	> th	dose independent	rect.	23	10
797	133.97	atmosphere	1000	720	> th	dose independent	rect.	21	14