BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0141800 Os12g0141800|AK100388
(356 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G13210.1 | chr5:4214567-4216588 FORWARD LENGTH=674 204 5e-53
AT5G43390.1 | chr5:17422940-17424871 REVERSE LENGTH=644 204 5e-53
AT5G43400.1 | chr5:17426182-17428149 REVERSE LENGTH=656 202 2e-52
AT3G24780.1 | chr3:9049446-9051593 FORWARD LENGTH=716 166 1e-41
>AT5G13210.1 | chr5:4214567-4216588 FORWARD LENGTH=674
Length = 673
Score = 204 bits (520), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 123/360 (34%), Positives = 185/360 (51%), Gaps = 26/360 (7%)
Query: 3 EKHYIFXXXXXXXXXXXXXXXKDLELPEIYMSKNQWSDLPYERVASEAMRIYEHLFKKHD 62
E HY + K L+LPE+YM W LPY RVAS AM+ Y+ +F KHD
Sbjct: 334 EAHYAYRVRDRLRKDVLVPLRKTLQLPEVYMGARNWDILPYNRVASVAMKSYKEIFLKHD 393
Query: 63 EGRFTAFLKDHKDSREXXXXXXXXXXPQPPLLQDIITSLGLASHASNIKRREDAAQQWRT 122
RF +L D K + L +II L + A QW+
Sbjct: 394 AERFQQYLDDAKAGKTKVAAGAV-------LPHEIIRELDGGDGG------QVAELQWKR 440
Query: 123 LVDHLRGKGSLCNCMAVCDVNKGGLVKSEGQKLLKICVGLGFLISELSSPPWTNSVHAFA 182
VD ++ KGSL NC+AVCDV+ G + E +++CV LG L+SELS PW + F+
Sbjct: 441 TVDDMKEKGSLRNCIAVCDVS--GSMNGEP---MEVCVALGLLVSELSEEPWKGKLITFS 495
Query: 183 SNYFPLVLPVGSYREKLNFIRQMPCEERFNLKKVFEGIITRAVTSGVTPDNMVKTIFIFT 242
N ++ K F+++M + +KVF+ I+ AV + P+ M+K +F+F+
Sbjct: 496 QNPELHLVKGDDLYSKTEFVKKMQWGMNTDFQKVFDLILGVAVQEKLKPEEMIKRVFVFS 555
Query: 243 DKFFEKASV-----RP-VELIEHEDFNPLSSRPWHEEYRRVCEEFKRVGFQDVVPQIVLW 296
D F++A+ RP + NP S W +Y + ++K+ G+ DVVP+IV W
Sbjct: 556 DMEFDQAASSSHYSRPGYAFLRQPPSNP--SNGWETDYEVIVRKYKQNGYGDVVPEIVFW 613
Query: 297 NLKGPRSAGLTATKDGVMTLSGYSDELMRLFLENNGVVEPEDEMLDAIAGDEYQKLQVID 356
NL+ R+ + K GV +SG+S LM++FLE++G ++P M AI+ DEY+ L V+D
Sbjct: 614 NLRDSRATPVPGNKKGVALVSGFSKNLMKMFLEHDGEIDPVMMMETAISKDEYKSLVVVD 673
>AT5G43390.1 | chr5:17422940-17424871 REVERSE LENGTH=644
Length = 643
Score = 204 bits (519), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 129/360 (35%), Positives = 186/360 (51%), Gaps = 26/360 (7%)
Query: 5 HYIFXXXXXXXXXXXXXXXKDLELPEIYMSKNQWSDLPYERVASEAMRIYEHLFKKHDEG 64
HY + K LELPE+ MS +W+ L Y RV S AM+ Y F +HD
Sbjct: 302 HYAYRIRDRLRKEVLVPLHKALELPEVSMSAKEWNLLKYNRVPSIAMQNYSSRFAEHDSE 361
Query: 65 RFTAFLKDHKDSREXXXXXXXXXXPQPPLLQDIITSLGLASHASNIKRREDAAQQWRTLV 124
RFT FL+D K ++ L II+ L S + A QW +V
Sbjct: 362 RFTEFLEDVKSGKKKMAAGAL-------LPHQIISQLLNDSEGEEV-----AELQWARMV 409
Query: 125 DHLRGKGSLCNCMAVCDVNKGGLVKSEGQKLLKICVGLGFLISELSSPPWTNSVHAFASN 184
D L KG L N +A+CDV+ G + + + +C+ LG L+SEL+ PW V F+ N
Sbjct: 410 DDLAKKGKLKNSLAICDVS-GSMAGTP----MNVCIALGLLVSELNEEPWKGKVITFSEN 464
Query: 185 YFPLVLPVGSYREKLNFIRQMPCEERFNLKKVFEGIITRAVTSGVTPDNMVKTIFIFTDK 244
V+ S REK F+R+M + +KVF+ I+ AV + +T + M+K +F+F+D
Sbjct: 465 PQLHVVTGSSLREKTKFVREMDFGINTDFQKVFDRILEVAVENNLTDEQMIKRLFVFSDM 524
Query: 245 FFEKASVRP-VELIEH-----EDFN--PLSSRPWHEEYRRVCEEFKRVGFQDVVPQIVLW 296
F+ A V E+ ++ D+ P S W +Y V ++K GFQ+ VP+IV W
Sbjct: 525 EFDDARVDSHSEMSDYASNLESDYESVPESFEKWETDYEVVQRKYKEKGFQN-VPEIVFW 583
Query: 297 NLKGPRSAGLTATKDGVMTLSGYSDELMRLFLENNGVVEPEDEMLDAIAGDEYQKLQVID 356
NL+ + + + + GV +SG+S L+ LFLE G+V PED ML AI G+EYQKL V D
Sbjct: 584 NLRDSSATPVVSKQKGVAMVSGFSKNLLTLFLEEGGIVNPEDVMLLAIKGEEYQKLAVYD 643
>AT5G43400.1 | chr5:17426182-17428149 REVERSE LENGTH=656
Length = 655
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 128/364 (35%), Positives = 186/364 (51%), Gaps = 23/364 (6%)
Query: 1 MKEKHYIFXXXXXXXXXXXXXXXKDLELPEIYMSKNQWSDLPYERVASEAMRIYEHLFKK 60
++E HY + K LE PE++MS +W+ L Y RV S AM+ Y+ LF++
Sbjct: 307 IEEAHYAYRIRDRLRKEVLVPLHKALEFPELFMSAKEWNLLKYNRVPSVAMKNYKKLFEE 366
Query: 61 HDEGRFTAFLKDHKDSREXXXXXXXXXXPQPPLLQDIITSLGLASHASNIKRREDAAQQW 120
HD RFT FL+D K ++ L II L + + E A QW
Sbjct: 367 HDSERFTEFLEDVKSGKKKIAAGAL-------LPHQIINQL--EDDSGSEVGAEVAELQW 417
Query: 121 RTLVDHLRGKGSLCNCMAVCDVNKGGLVKSEGQKLLKICVGLGFLISELSSPPWTNSVHA 180
+VD L KG L N +AVCDV+ S +++CV LG L+SELS PW V
Sbjct: 418 ARMVDDLAKKGKLKNSLAVCDVSG-----SMSGTPMEVCVALGLLVSELSEEPWKGKVIT 472
Query: 181 FASNYFPLVLPVGSYREKLNFIRQMPCEERFNLKKVFEGIITRAVTSGVTPDNMVKTIFI 240
F+ N ++ S REK F+R+M + + VF+ I+ AV + +T D M+K +F+
Sbjct: 473 FSENPELHIVTGSSLREKTQFVREMEWGMNTDFQIVFDRILEVAVENNLTDDQMIKRLFV 532
Query: 241 FTDKFFEKASVRPVELIEH----EDFNPL----SSRPWHEEYRRVCEEFKRVGFQDVVPQ 292
F+D F+ A + + ED + S W +Y V ++K GFQ+ VP+
Sbjct: 533 FSDMEFDDAMANSHSEVSYHLSVEDRLKISKERSKEKWETDYEVVQRKYKEKGFQN-VPE 591
Query: 293 IVLWNLKGPRSAGLTATKDGVMTLSGYSDELMRLFLENNGVVEPEDEMLDAIAGDEYQKL 352
+V WNL+ + + A + GV +SG+S L+ LFLE G+V PED M AI G+EY+KL
Sbjct: 592 MVFWNLRDSSATPVVANQKGVAMVSGFSKNLLTLFLEEGGIVNPEDVMWIAIKGEEYKKL 651
Query: 353 QVID 356
V D
Sbjct: 652 VVFD 655
>AT3G24780.1 | chr3:9049446-9051593 FORWARD LENGTH=716
Length = 715
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 161/346 (46%), Gaps = 35/346 (10%)
Query: 1 MKEKHYIFXXXXXXXXXXXXXXXKDLELPEIYMSKNQWSDLPYERVASEAMRIYEHLFKK 60
+++ HY + K L+LPE+YM W LPY RVAS AM+ Y+ +F
Sbjct: 384 VEDAHYAYRVRDRLRKQVLVPLRKTLQLPEVYMGARAWQSLPYNRVASVAMKSYKEVFLY 443
Query: 61 HDEGRFTAFLKDHKDSREXXXXXXXXXXPQPPLLQDIITSLGLASHASNIKRREDAAQQW 120
DE RF +L D K + L +II L + A QW
Sbjct: 444 RDEKRFQQYLNDAKTGKTKIAAGAV-------LPHEIIRELNGGDGG------KVAELQW 490
Query: 121 RTLVDHLRGKGSLCNCMAVCDVNKGGLVKSEGQKLLKICVGLGFLISELSSPPWTNSVHA 180
+ +VD L+ KGSL NCMA+CDV+ G + E +++ V LG L+SELS PW +
Sbjct: 491 KRMVDDLKEKGSLTNCMAICDVS--GSMNGEP---MEVSVALGLLVSELSEEPWKGKLIT 545
Query: 181 FASNYFPLVLPVGSYREKLNFIRQMPCEERFNLKKVFEGIITRAVTSGVTPDNMVKTIFI 240
F + ++ R K F+ M + + +KVF+ I+ AV S + P +M+K +F+
Sbjct: 546 FRQSPELHLVKGDDLRSKTEFVESMQWDMNTDFQKVFDLILKVAVESKLKPQDMIKRVFV 605
Query: 241 FTDKFFEKASVRPVELIEHEDFNPLSSR-----------------PWHEEYRRVCEEFKR 283
F+D F++AS + P S W +Y+ + +++
Sbjct: 606 FSDMEFDEASTSTSSFNKWRSSPPTPSNRWDTLSYSEDDEDEENDAWQTDYKVIVRKYRE 665
Query: 284 VGFQDVVPQIVLWNLKGPRSAGLTATKDGVMTLSGYSDELMRLFLE 329
G+ + VP+IV WNL+ RS + K GV +SG+S + + +E
Sbjct: 666 KGYGEAVPEIVFWNLRDSRSTPVLGNKKGVALVSGFSKKCSWITME 711
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,523,119
Number of extensions: 310129
Number of successful extensions: 635
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 621
Number of HSP's successfully gapped: 4
Length of query: 356
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 256
Effective length of database: 8,364,969
Effective search space: 2141432064
Effective search space used: 2141432064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)