Os12g0139500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA polymerase Rpb5, N-terminal domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os12g0139500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : RNA polymerase Rpb5, N-terminal domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.39 | 0.241 | 12 | 0.439 | 0.465 | 1.35 | 0.192 | -0.399 | 0.015 | 11 | 14.92 | 653 | -- | -- |
| 26.5 | 0.24 | 12 | 0.494 | 0.465 | 1.35 | 0.251 | -- | 0.0313 | 11 | 14.67 | 667 | -- | -- |
| 26.52 | 0.24 | 12 | 0.418 | 0.465 | 1.32 | -- | -0.57 | 0.00933 | 11 | 15.42 | 649 | -- | -- |
| 26.76 | 0.241 | 12 | 0.518 | 0.468 | 1.34 | -- | -- | 0.0353 | 11.1 | 14.8 | 669 | -- | -- |
| 27.98 | 0.246 | 12 | 0.536 | -- | 1.41 | -- | -0.299 | 0.0341 | -- | 13.12 | 21 | -- | -- |
| 48.99 | 0.328 | 12 | 0.843 | 0.333 | -- | 0.235 | -- | 0.241 | 14.1 | -- | -- | -- | -- |
| 49.2 | 0.328 | 12 | 0.85 | 0.333 | -- | -- | -- | 0.242 | 14.1 | -- | -- | -- | -- |
| 28.05 | 0.247 | 12 | 0.577 | -- | 1.4 | -- | -- | 0.0456 | -- | 12.91 | 21 | -- | -- |
| 32.92 | 0.267 | 12 | -- | 0.534 | 1.51 | -- | -- | -0.0465 | 11.8 | 14.5 | 826 | -- | -- |
| 55.85 | 0.349 | 12 | 0.836 | -- | -- | -- | -- | 0.234 | -- | -- | -- | -- | -- |
| 68.25 | 0.386 | 12 | -- | 0.317 | -- | -- | -- | 0.147 | 14.1 | -- | -- | -- | -- |
| 36.32 | 0.281 | 12.1 | -- | -- | 1.58 | -- | -- | -0.035 | -- | 10.24 | 46 | -- | -- |
| 74.29 | 0.402 | 12 | -- | -- | -- | -- | -- | 0.141 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.15 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 22 |
| 4 | 25.37 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 8 | 25.54 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 21 | 25.75 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 24 | 25.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 54 | 26.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 19 |
| 100 | 26.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 112 | 26.43 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 162 | 26.60 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 170 | 26.63 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 191 | 26.70 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 230 | 26.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 15 |
| 234 | 26.80 | temperature | 15 | 720 | > th | dose dependent | sin | 3 | NA |
| 284 | 26.88 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 319 | 26.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 377 | 27.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 401 | 27.04 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 461 | 27.12 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 562 | 27.23 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 603 | 27.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 21 |
| 649 | 27.32 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 15 |
| 873 | 27.52 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 952 | 27.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 993 | 27.62 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 1 |