BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0139500 Os12g0139500|AK063339
(227 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G57080.1 | chr3:21125878-21127470 FORWARD LENGTH=223 213 7e-56
AT2G41340.1 | chr2:17229026-17230442 FORWARD LENGTH=219 202 1e-52
AT3G54490.1 | chr3:20173673-20175297 FORWARD LENGTH=234 196 1e-50
AT3G22320.1 | chr3:7891045-7892094 REVERSE LENGTH=206 134 5e-32
AT5G57980.1 | chr5:23469050-23469768 REVERSE LENGTH=211 113 8e-26
>AT3G57080.1 | chr3:21125878-21127470 FORWARD LENGTH=223
Length = 222
Score = 213 bits (542), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 101/211 (47%), Positives = 149/211 (70%), Gaps = 2/211 (0%)
Query: 18 CIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLA 77
C++ +D S ESHR +LARR ++MLRDRGY V + +I +L +FR + E+P ++RL
Sbjct: 13 CLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLR 72
Query: 78 FTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQT-KEENLSRLVLILQSKILSRAREAI 136
+ SD +KKV++VF VK+ IR + +E ++ L+L+LQ+ + ++A +AI
Sbjct: 73 ISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAI 132
Query: 137 KEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAV 196
E+F FKV+IFQ TDLLVNITKH LKP+H+VL+ ++K LLK++++E+ QLPR+ + DA+
Sbjct: 133 -ELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAI 191
Query: 197 ARYYGFDKGTVVKVTYDGELTGKRVAYRCVF 227
RYYG +KG VVKV Y GELT VA+RCV+
Sbjct: 192 VRYYGLEKGQVVKVNYRGELTESHVAFRCVW 222
>AT2G41340.1 | chr2:17229026-17230442 FORWARD LENGTH=219
Length = 218
Score = 202 bits (513), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 97/209 (46%), Positives = 141/209 (67%), Gaps = 2/209 (0%)
Query: 19 IASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAF 78
+ I + SVE H+ +LARRT MEMLRDRGY V + +I +L +FRA + E P ++ L
Sbjct: 10 VGHSISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRI 69
Query: 79 TTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQT-KEENLSRLVLILQSKILSRAREAIK 137
+ D SKK+ +VFC VK+ +R I EN++ L+L+LQS I ++A +A+
Sbjct: 70 SAKHRFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAV- 128
Query: 138 EIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVA 197
E+F FKV++F+ TDLLVN++KHVL+PKH+VL+ +K LLK++++E+ QLPR+ D +
Sbjct: 129 ELFSFKVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIV 188
Query: 198 RYYGFDKGTVVKVTYDGELTGKRVAYRCV 226
RYYG + G V+KVTY EL+ V YRCV
Sbjct: 189 RYYGLETGQVMKVTYKDELSESHVTYRCV 217
>AT3G54490.1 | chr3:20173673-20175297 FORWARD LENGTH=234
Length = 233
Score = 196 bits (497), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 138/210 (65%), Gaps = 2/210 (0%)
Query: 18 CIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLA 77
CI+ D G +ES R +LAR TA EMLRDRGY V EAE++ TL EFR+ + EKP +ERL
Sbjct: 24 CISKTEDTGGIESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLR 83
Query: 78 FTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQTKEE-NLSRLVLILQSKILSRAREAI 136
L SDP KK+ +VF EP+ + ++R +++Q L ++L+LQSK+ A++A+
Sbjct: 84 ICVPLRSDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKAL 143
Query: 137 KEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAV 196
F F V+ F DLLVNITKH+ +PK E+L+ ++K +LL+++ +ED QLP + E D+
Sbjct: 144 T-TFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSF 202
Query: 197 ARYYGFDKGTVVKVTYDGELTGKRVAYRCV 226
RYYG K VVK+TY E G V YRC+
Sbjct: 203 VRYYGLKKKQVVKITYSKEPVGDFVTYRCI 232
>AT3G22320.1 | chr3:7891045-7892094 REVERSE LENGTH=206
Length = 205
Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 117/199 (58%), Gaps = 1/199 (0%)
Query: 29 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLVSDPSK 88
E RL+ ++T M+MLRDRGY + ++E+ T +F + E L +D S
Sbjct: 6 ELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNSD 65
Query: 89 KVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIF 147
++ + F V + T++ + K EN+ R +L++Q + AR I EI KF +++F
Sbjct: 66 QLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKFHLEVF 125
Query: 148 QATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYYGFDKGTV 207
Q ++LVNI +HVL P+H+VL+ ++K LL+ Y V+++QLPR+ TD +ARY+G +G V
Sbjct: 126 QEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQV 185
Query: 208 VKVTYDGELTGKRVAYRCV 226
VK+ E G+ V YR V
Sbjct: 186 VKIIRPSETAGRYVTYRYV 204
>AT5G57980.1 | chr5:23469050-23469768 REVERSE LENGTH=211
Length = 210
Score = 113 bits (283), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 112/188 (59%), Gaps = 7/188 (3%)
Query: 29 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAE---KPGIERLAFTTTLVSD 85
E R+F RRT ++MLRDRGY++ E+++ EF + + K E L + +
Sbjct: 7 EITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKGPN 66
Query: 86 PSKKVQLVFCPPEP-VKIATIR-EIYLQTKEENLSRLVLILQSKILSRAREAIKEIFK-F 142
P+ K+ VF P P V + I+ E+ ++ +++ + R ++++ I + AR A+ E+ K
Sbjct: 67 PADKI-YVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKML 125
Query: 143 KVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYYGF 202
+++F+ +L+ NIT+H L K+ VL K KLL Y V+D+QLPR+L TD +ARYYG
Sbjct: 126 TIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLARYYGL 185
Query: 203 DKGTVVKV 210
+G VVK+
Sbjct: 186 KRGQVVKI 193
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.135 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,149,568
Number of extensions: 156220
Number of successful extensions: 465
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 5
Length of query: 227
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 132
Effective length of database: 8,502,049
Effective search space: 1122270468
Effective search space used: 1122270468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)