Os12g0138900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Plastid isopropylmalate synthase (Fragment).
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Os12g0138900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Plastid isopropylmalate synthase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.04 | 0.361 | 13.7 | 0.895 | 1.84 | 0.871 | 0.535 | -0.679 | 0.202 | 19.9 | 25.1 | 88 | -- | -- |
| 59.29 | 0.359 | 13.7 | 0.931 | 1.83 | 0.824 | 0.541 | -- | 0.201 | 19.9 | 24.9 | 89 | -- | -- |
| 59.87 | 0.36 | 13.7 | 0.885 | 1.84 | 0.888 | -- | -0.624 | 0.202 | 19.9 | 25.1 | 87 | -- | -- |
| 60.02 | 0.361 | 13.7 | 0.957 | 1.84 | 0.833 | -- | -- | 0.218 | 19.9 | 25 | 86 | -- | -- |
| 176.35 | 0.618 | 13.9 | 0.275 | -- | 1.93 | -- | -2.4 | -0.22 | -- | 24.3 | 491 | -- | -- |
| 69.72 | 0.391 | 13.7 | 1.11 | 2.01 | -- | 0.794 | -- | 0.284 | 19.3 | -- | -- | -- | -- |
| 71.43 | 0.396 | 13.7 | 1.09 | 2.01 | -- | -- | -- | 0.285 | 19.3 | -- | -- | -- | -- |
| 175.14 | 0.616 | 13.7 | 0.711 | -- | 1.95 | -- | -- | 0.0751 | -- | 24.5 | 499 | -- | -- |
| 83.06 | 0.424 | 13.8 | -- | 1.76 | 1.03 | -- | -- | 0.0682 | 20.1 | 24.3 | 119 | -- | -- |
| 285.64 | 0.79 | 13.7 | 1.06 | -- | -- | -- | -- | 0.252 | -- | -- | -- | -- | -- |
| 102.98 | 0.475 | 13.8 | -- | 2 | -- | -- | -- | 0.164 | 19.4 | -- | -- | -- | -- |
| 188.11 | 0.639 | 13.7 | -- | -- | 2.07 | -- | -- | -0.014 | -- | 24.45 | 508 | -- | -- |
| 315.31 | 0.829 | 13.7 | -- | -- | -- | -- | -- | 0.134 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.98 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 2 | 55.05 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 3 | 55.05 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 5 | 55.34 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 4 |
| 6 | 55.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 12 |
| 9 | 55.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 27 | 56.23 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 6 |
| 41 | 56.46 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 12 |
| 81 | 57.06 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 101 | 57.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 8 |
| 114 | 57.35 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 5 |
| 132 | 57.43 | temperature | 25 | 270 | > th | dose independent | sin | 0 | NA |
| 158 | 57.54 | temperature | 20 | 30 | > th | dose dependent | sin | 22 | NA |
| 168 | 57.58 | temperature | 25 | 90 | > th | dose dependent | sin | 0 | NA |
| 199 | 57.75 | temperature | 25 | 270 | < th | dose independent | sin | 0 | NA |
| 210 | 57.78 | temperature | 30 | 30 | < th | dose dependent | rect. | 6 | 16 |
| 213 | 57.80 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 12 |
| 224 | 57.85 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 16 |
| 238 | 57.91 | temperature | 25 | 270 | > th | dose dependent | sin | 4 | NA |
| 261 | 57.98 | temperature | 30 | 90 | < th | dose dependent | sin | 22 | NA |
| 295 | 58.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 11 |
| 330 | 58.20 | temperature | 30 | 30 | < th | dose dependent | rect. | 6 | 14 |
| 333 | 58.22 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 12 |
| 341 | 58.23 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 427 | 58.44 | temperature | 25 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 490 | 58.62 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 16 |
| 531 | 58.73 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 14 |
| 699 | 59.06 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 719 | 59.09 | humidity | 90 | 720 | > th | dose dependent | rect. | 22 | 3 |
| 736 | 59.12 | humidity | 90 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 750 | 59.13 | temperature | 25 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 772 | 59.18 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 886 | 59.38 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 8 |
| 990 | 59.54 | wind | 1 | 1440 | > th | dose independent | rect. | 23 | 2 |