Os12g0129700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os12g0129700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 225.76 | 0.706 | 6.68 | 5.34 | 0.554 | -2.4 | -0.78 | 4.86 | 1.47 | 6.07 | 24.18 | 873 | -- | -- |
| 234.82 | 0.714 | 6.8 | 4.38 | 0.672 | -1.87 | -1.01 | -- | 1.25 | 6.69 | 24.04 | 903 | -- | -- |
| 226.86 | 0.702 | 6.67 | 5.42 | 0.635 | -2.37 | -- | 5.28 | 1.47 | 6.36 | 24.36 | 908 | -- | -- |
| 237.44 | 0.718 | 6.8 | 4.33 | 0.693 | -1.85 | -- | -- | 1.19 | 6.74 | 24.4 | 908 | -- | -- |
| 235.37 | 0.715 | 6.67 | 5.47 | -- | -2.71 | -- | 5.72 | 1.54 | -- | 24.1 | 775 | -- | -- |
| 319.15 | 0.838 | 6.83 | 3.87 | 1.14 | -- | -0.39 | -- | 0.987 | 7.98 | -- | -- | -- | -- |
| 319.58 | 0.837 | 6.83 | 3.86 | 1.14 | -- | -- | -- | 0.988 | 8.04 | -- | -- | -- | -- |
| 249.04 | 0.735 | 6.8 | 4.38 | -- | -2.24 | -- | -- | 1.24 | -- | 24.18 | 763 | -- | -- |
| 695.23 | 1.23 | 6.95 | -- | 0.957 | -0.767 | -- | -- | 0.5 | 7.59 | 27.94 | 871 | -- | -- |
| 390.23 | 0.923 | 6.86 | 3.87 | -- | -- | -- | -- | 1 | -- | -- | -- | -- | -- |
| 711.36 | 1.25 | 6.92 | -- | 1.16 | -- | -- | -- | 0.559 | 7.8 | -- | -- | -- | -- |
| 727.01 | 1.26 | 6.94 | -- | -- | -1.4 | -- | -- | 0.642 | -- | 25 | 697 | -- | -- |
| 784.5 | 1.31 | 6.95 | -- | -- | -- | -- | -- | 0.573 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 217.10 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 4 | 219.77 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 9 | 221.10 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 32 | 223.75 | temperature | 25 | 720 | > th | dose dependent | sin | 16 | NA |
| 68 | 228.13 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 170 | 234.02 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 5 |
| 175 | 234.07 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 19 |
| 177 | 234.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 178 | 234.18 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 180 | 234.25 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 21 |
| 199 | 235.23 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 14 |
| 204 | 235.48 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 17 |
| 213 | 235.89 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 21 |
| 217 | 236.06 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 3 |
| 236 | 236.30 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 269 | 236.53 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 7 |
| 271 | 236.63 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 289 | 236.98 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 324 | 237.81 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 8 |
| 336 | 238.11 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 339 | 238.15 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 349 | 238.29 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 352 | 238.38 | radiation | 1 | 720 | > th | dose independent | sin | 22 | NA |
| 379 | 238.93 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 398 | 239.51 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 17 |
| 406 | 239.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 412 | 239.74 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 18 |
| 415 | 239.82 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 429 | 240.02 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 7 |
| 436 | 240.19 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 448 | 240.40 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 14 |
| 459 | 240.62 | temperature | 25 | 720 | > th | dose independent | sin | 19 | NA |
| 461 | 240.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 463 | 240.74 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 12 |
| 467 | 240.83 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 480 | 240.98 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 488 | 241.09 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 5 |
| 497 | 241.23 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 1 |
| 530 | 241.60 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 11 |
| 548 | 241.80 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 20 |
| 597 | 242.58 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 23 |
| 602 | 242.60 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 11 |
| 645 | 242.85 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 11 |
| 709 | 243.13 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 715 | 243.13 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 772 | 243.36 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 774 | 243.37 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 9 |
| 859 | 243.69 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 914 | 244.09 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 4 |
| 927 | 244.14 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 8 |
| 959 | 244.38 | radiation | 1 | 720 | < th | dose independent | rect. | 19 | 23 |
| 974 | 244.55 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 985 | 244.57 | wind | 5 | 43200 | > th | dose dependent | sin | 20 | NA |
| 986 | 244.58 | wind | 7 | 43200 | < th | dose independent | sin | 21 | NA |
| 992 | 244.61 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |