Os12g0116700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to WRKY transcription factor 64.
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Os12g0116700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to WRKY transcription factor 64.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 835.44 | 1.36 | 4.41 | -2.72 | 1.22 | 2.28 | 0.532 | -5.02 | 1.74 | 8.91 | 9.93 | 23134 | 0.0431 | -- |
| 873.51 | 1.38 | 4.23 | -2.68 | 1.22 | 2.83 | 0.492 | -- | 1.91 | 8.98 | 9.335 | 24695 | 0.107 | -- |
| 815.87 | 1.33 | 4.38 | -2.53 | 1.18 | 2.22 | -- | -4.99 | 1.93 | 8.96 | 29.06 | 24554 | 0.0882 | -- |
| 865.34 | 1.37 | 4.25 | -3.05 | 1.16 | 3.37 | -- | -- | 1.77 | 9.5 | 9.404 | 24786 | 2.91 | -- |
| 860.24 | 1.37 | 4.36 | -2.35 | -- | 3.12 | -- | -4.97 | 2.08 | -- | 36.06 | 25004 | 0.837 | -- |
| 1058.69 | 1.53 | 4.3 | -1.46 | 1.26 | -- | 0.496 | -- | 1.56 | 8.78 | -- | -- | -- | -- |
| 1059.51 | 1.52 | 4.3 | -1.44 | 1.26 | -- | -- | -- | 1.56 | 8.8 | -- | -- | -- | -- |
| 874.53 | 1.38 | 4.29 | -3.24 | -- | 4.25 | -- | -- | 1.73 | -- | 49.05 | 24957 | 1.32 | -- |
| 996.07 | 1.47 | 4.2 | -- | 1.1 | 2.67 | -- | -- | 2.36 | 9.18 | 13.69 | 18953 | 3.29 | -- |
| 1149.19 | 1.58 | 4.34 | -1.44 | -- | -- | -- | -- | 1.57 | -- | -- | -- | -- | -- |
| 1114.36 | 1.56 | 4.27 | -- | 1.25 | -- | -- | -- | 1.73 | 8.89 | -- | -- | -- | -- |
| 981.1 | 1.46 | 4.16 | -- | -- | 2.84 | -- | -- | 2.44 | -- | 11.83 | 23827 | 3.35 | -- |
| 1204 | 1.62 | 4.3 | -- | -- | -- | -- | -- | 1.73 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 792.86 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 17 | 792.86 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 33 | 795.82 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 34 | 795.82 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 37 | 796.95 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 38 | 796.95 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 51 | 805.81 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 23 | 11 |
| 52 | 805.97 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 23 | 11 |
| 53 | 805.98 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 18 | 15 |
| 54 | 806.01 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 56 | 806.04 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 57 | 806.04 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 22 | 11 |
| 61 | 806.06 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 62 | 806.08 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 64 | 806.10 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 10 | NA |
| 76 | 806.42 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 19 | 16 |
| 82 | 806.52 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 90 | 806.64 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 126 | 807.54 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 243 | 812.01 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 248 | 812.22 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 23 | 5 |
| 255 | 812.39 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 260 | 812.55 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 262 | 812.59 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 276 | 812.68 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 6 |
| 301 | 812.87 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 328 | 812.87 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 405 | 813.61 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 410 | 813.73 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 422 | 813.95 | wind | 9.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 427 | 814.14 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 485 | 816.67 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 497 | 817.21 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 501 | 817.31 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 510 | 817.76 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 522 | 818.58 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 526 | 818.77 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 536 | 819.38 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 552 | 820.50 | wind | 7.0 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 564 | 821.27 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 565 | 821.27 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 566 | 821.38 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 585 | 822.70 | wind | 1.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 595 | 823.15 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 3 |
| 597 | 823.52 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 598 | 823.74 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 604 | 824.11 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 662 | 827.99 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 674 | 827.99 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 695 | 828.40 | wind | 1.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 700 | 828.47 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 721 | 829.12 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 811 | 833.43 | atmosphere | 995.0 | 43200 | < th | dose dependent | no | NA | NA |
| 835 | 834.32 | wind | 9.0 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 893 | 836.39 | wind | 1.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 896 | 836.49 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 906 | 837.04 | wind | 1.0 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 908 | 837.12 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 909 | 837.16 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 910 | 837.26 | wind | 9.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 931 | 837.48 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 2 | 12 |
| 935 | 837.51 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 21 | 17 |
| 943 | 837.60 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 974 | 838.41 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 978 | 838.54 | wind | 1.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 1000 | 839.08 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 18 | 1 |