Os12g0111500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : BTB domain containing protein.
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Os12g0111500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : BTB domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.45 | 0.437 | 4.43 | 2.35 | 0.298 | -33.7 | -0.367 | -70.1 | 0.00354 | 7.41 | 15.02 | 4272 | -- | -- |
| 98.68 | 0.466 | 3.2 | -0.74 | 0.296 | -0.457 | -0.327 | -- | -0.1 | 7.41 | 14.7 | 1344 | -- | -- |
| 86.81 | 0.434 | 4.43 | 2.34 | 0.297 | -33.7 | -- | -70 | 0.00388 | 7.58 | 15.01 | 4267 | -- | -- |
| 90.71 | 0.444 | 3.18 | -0.697 | 0.345 | -0.569 | -- | -- | -0.0392 | 7.27 | 18.79 | 2562 | -- | -- |
| 91.52 | 0.446 | 4.44 | 2.33 | -- | -33.6 | -- | -69.9 | 0.00688 | -- | 15 | 4267 | -- | -- |
| 99.08 | 0.467 | 3.2 | -0.758 | 0.293 | -- | -0.309 | -- | -0.105 | 7.29 | -- | -- | -- | -- |
| 99.32 | 0.467 | 3.2 | -0.764 | 0.292 | -- | -- | -- | -0.104 | 7.49 | -- | -- | -- | -- |
| 92.29 | 0.447 | 3.17 | -0.289 | -- | -0.918 | -- | -- | 0.0884 | -- | 18.81 | 3486 | -- | -- |
| 89.33 | 0.44 | 3.14 | -- | 0.32 | -1.11 | -- | -- | 0.144 | 6.46 | 18.8 | 3855 | -- | -- |
| 103.87 | 0.476 | 3.21 | -0.76 | -- | -- | -- | -- | -0.0992 | -- | -- | -- | -- | -- |
| 114.72 | 0.501 | 3.18 | -- | 0.285 | -- | -- | -- | -0.0187 | 7.67 | -- | -- | -- | -- |
| 93.57 | 0.451 | 3.16 | -- | -- | -1.12 | -- | -- | 0.146 | -- | 18.72 | 3643 | -- | -- |
| 119.1 | 0.509 | 3.19 | -- | -- | -- | -- | -- | -0.0149 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.60 | temperature | 15 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 5 | 83.46 | temperature | 15 | 4320 | > th | dose independent | rect. | 3 | 6 |
| 7 | 83.57 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 8 | 83.74 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 2 |
| 17 | 84.03 | temperature | 20 | 4320 | < th | dose dependent | rect. | 16 | 3 |
| 24 | 84.14 | wind | 3 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 37 | 84.40 | wind | 3 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 44 | 84.65 | wind | 3 | 4320 | < th | dose dependent | rect. | 6 | 3 |
| 53 | 84.75 | wind | 5 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 68 | 85.02 | temperature | 20 | 4320 | < th | dose independent | rect. | 11 | 9 |
| 87 | 85.21 | temperature | 20 | 4320 | > th | dose independent | rect. | 11 | 9 |
| 140 | 85.71 | temperature | 15 | 4320 | > th | dose independent | sin | 5 | NA |
| 155 | 85.81 | temperature | 15 | 4320 | < th | dose independent | sin | 5 | NA |
| 174 | 85.93 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 18 |
| 176 | 85.94 | temperature | 15 | 4320 | > th | dose independent | rect. | 1 | 15 |
| 179 | 85.95 | temperature | 15 | 4320 | < th | dose independent | rect. | 22 | 12 |
| 188 | 85.99 | temperature | 15 | 4320 | < th | dose independent | rect. | 22 | 9 |
| 195 | 86.01 | temperature | 15 | 4320 | > th | dose independent | rect. | 22 | 12 |
| 207 | 86.04 | temperature | 15 | 4320 | > th | dose independent | rect. | 22 | 10 |
| 232 | 86.12 | temperature | 15 | 4320 | < th | dose independent | rect. | 1 | 16 |
| 255 | 86.16 | temperature | 15 | 4320 | > th | dose independent | rect. | 19 | 15 |
| 256 | 86.17 | temperature | 15 | 4320 | > th | dose independent | rect. | 19 | 13 |
| 286 | 86.20 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 20 |
| 299 | 86.22 | temperature | 15 | 4320 | > th | dose independent | rect. | 17 | 15 |
| 301 | 86.22 | temperature | 15 | 4320 | > th | dose independent | rect. | 17 | 17 |
| 302 | 86.22 | temperature | 15 | 4320 | > th | dose independent | rect. | 23 | 19 |
| 310 | 86.23 | temperature | 15 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 314 | 86.23 | wind | 1 | 43200 | < th | dose independent | rect. | 7 | 20 |
| 369 | 86.29 | temperature | 15 | 4320 | < th | dose independent | rect. | 16 | 18 |
| 393 | 86.30 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 425 | 86.36 | wind | 1 | 43200 | > th | dose independent | sin | 16 | NA |
| 435 | 86.36 | wind | 1 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 442 | 86.37 | wind | 1 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 484 | 86.42 | wind | 1 | 43200 | < th | dose independent | sin | 17 | NA |
| 500 | 86.43 | wind | 1 | 43200 | > th | dose independent | rect. | 7 | 20 |
| 525 | 86.45 | wind | 1 | 43200 | < th | dose independent | rect. | 12 | 15 |
| 547 | 86.47 | radiation | 40 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 569 | 86.47 | temperature | 15 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 570 | 86.47 | radiation | 40 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 609 | 86.50 | wind | 1 | 43200 | > th | dose independent | rect. | 12 | 15 |
| 630 | 86.52 | temperature | 15 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 650 | 86.54 | temperature | 15 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 677 | 86.58 | temperature | 15 | 4320 | > th | dose independent | no | NA | NA |
| 693 | 86.59 | temperature | 15 | 4320 | < th | dose independent | no | NA | NA |
| 730 | 86.65 | temperature | 15 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 731 | 86.65 | humidity | 50 | 43200 | < th | dose dependent | rect. | 19 | 14 |
| 732 | 86.66 | temperature | 20 | 4320 | < th | dose independent | sin | 20 | NA |
| 768 | 86.72 | wind | 1 | 43200 | < th | dose dependent | sin | 19 | NA |
| 815 | 86.82 | wind | 1 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 816 | 86.83 | temperature | 20 | 4320 | > th | dose independent | sin | 20 | NA |
| 827 | 86.84 | wind | 3 | 14400 | < th | dose independent | rect. | 6 | 13 |
| 837 | 86.86 | wind | 3 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 840 | 86.87 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 19 |
| 863 | 86.92 | temperature | 20 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 878 | 86.95 | temperature | 20 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 886 | 86.96 | humidity | 90 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 894 | 86.98 | radiation | 30 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 967 | 87.10 | humidity | 60 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 973 | 87.11 | wind | 1 | 43200 | > th | dose independent | rect. | 15 | 11 |
| 983 | 87.13 | humidity | 60 | 43200 | < th | dose independent | rect. | 22 | 6 |