BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0111500 Os12g0111500|AK061388
(275 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G56230.1 | chr3:20860899-20862135 REVERSE LENGTH=283 202 1e-52
AT1G01640.1 | chr1:231164-231915 REVERSE LENGTH=208 155 2e-38
AT2G40450.1 | chr2:16892024-16892790 REVERSE LENGTH=210 77 1e-14
AT4G08455.1 | chr4:5375891-5376922 FORWARD LENGTH=244 74 9e-14
AT5G48510.1 | chr5:19658080-19658882 FORWARD LENGTH=225 69 2e-12
AT4G04090.1 | chr4:1964980-1965650 FORWARD LENGTH=193 68 5e-12
AT2G05330.1 | chr2:1938618-1939470 REVERSE LENGTH=216 65 3e-11
AT1G55760.1 | chr1:20847117-20848507 REVERSE LENGTH=330 63 2e-10
AT1G21780.1 | chr1:7652476-7653866 FORWARD LENGTH=327 60 1e-09
AT2G40440.1 | chr2:16889212-16891292 REVERSE LENGTH=195 56 2e-08
AT2G39760.1 | chr2:16583213-16585983 FORWARD LENGTH=409 53 2e-07
AT5G13060.1 | chr5:4142958-4146952 FORWARD LENGTH=738 50 2e-06
AT3G43700.1 | chr3:15601944-15603499 FORWARD LENGTH=416 49 2e-06
>AT3G56230.1 | chr3:20860899-20862135 REVERSE LENGTH=283
Length = 282
Score = 202 bits (515), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 107/275 (38%), Positives = 163/275 (59%), Gaps = 12/275 (4%)
Query: 1 MDCCVCSPMASMYRLPRNAICAACYEGAKAIIAFFNXXXXXXXXXXQGSVKPSRLTK--- 57
MDC +C+ M S+ R PRN IC +CYEGA+ IA S S +
Sbjct: 1 MDCSICTTMPSILRPPRNTICGSCYEGARTTIALLKKLEGSKEDRHDKSNHNSTINNGSS 60
Query: 58 ------LNSTTKGLRDAWEEVKQMRCREEETKQRASFLQQGFAAAWKDGIHTDIAVRPGT 111
+ + L + +K M+ EEE K+R FL F + +K+ +H DI ++PG
Sbjct: 61 ISSSPLFSCEPQPLEKVIKWMKNMKETEEEQKKRIVFLS-SFVSGFKEQLHADILLKPGD 119
Query: 112 -GPPIQAHKAILATRSEVFRHILAGDDDCKAPAGDSLSLPELTHDELSHLLAFLYTGSLA 170
GPPI AH+A+LA++SE+F++IL D CK +++L EL ++L LL FLYTG+LA
Sbjct: 120 DGPPIPAHRALLASKSEIFKNILDSDG-CKTAPEYAITLQELNSEQLQALLEFLYTGTLA 178
Query: 171 TCTEERHLHALLVAGDKYDVPFLRRACEARLAAGVEAGNVLRTLEVAELSSSAALKERAM 230
+ E++++AL +A DKY + +L+ CE + + ++ +VL L+V++L SS LKE +
Sbjct: 179 SDKLEKNVYALFIAADKYMIHYLQELCEQYMLSSLDISSVLNVLDVSDLGSSKTLKEACV 238
Query: 231 GAVVEHAEEVVFSPEYEEFAVRNAALCVQITRALL 265
G VV + ++VVFS +YE F+ +N LCV+ITRA L
Sbjct: 239 GFVVRNMDDVVFSDKYEPFSQKNQHLCVEITRAFL 273
>AT1G01640.1 | chr1:231164-231915 REVERSE LENGTH=208
Length = 207
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 118/186 (63%), Gaps = 5/186 (2%)
Query: 81 ETKQRASFLQQGFAAAWKDGIHTDIAVRPGT-GPPIQAHKAILATRSEVFRHILAGDDDC 139
E +Q+A+FL G ++K+ +HTD+ V+PG PPI HKA+LA RS+VFR++L D+ C
Sbjct: 3 EAEQKAAFLG-GLVVSFKEQMHTDVLVKPGEEAPPIPTHKAVLAARSKVFRNMLDSDE-C 60
Query: 140 KAPAGDSLSLPELTHDELSHLLAFLYTGSLATCTEERHLHALLVAGDKYDVPFLRRACEA 199
K +S++LP+L+HDEL LL FLY+G+L + +L +A DKYD+ +L+ C
Sbjct: 61 KTSPEESITLPDLSHDELKSLLEFLYSGNLKAPYNQ--YRSLYLAADKYDISYLQDVCRN 118
Query: 200 RLAAGVEAGNVLRTLEVAELSSSAALKERAMGAVVEHAEEVVFSPEYEEFAVRNAALCVQ 259
A + + NVL LE+A + LK+ A+ +V+H EEVV +YE F RN L V+
Sbjct: 119 HFIASLSSRNVLDILELASIPCDTILKDAAINHIVKHMEEVVVPMKYETFVQRNPDLSVE 178
Query: 260 ITRALL 265
ITRA L
Sbjct: 179 ITRAYL 184
>AT2G40450.1 | chr2:16892024-16892790 REVERSE LENGTH=210
Length = 209
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 6/178 (3%)
Query: 92 GFAAAWKDGIHTDIAVRPGTG---PPIQAHKAILATRSEVFRHILAGDD-DCKAPAGDSL 147
GF + D+ ++ G I AHK +L RSEVF+ IL D+ + +++
Sbjct: 13 GFKKLLNEQWQADVRLKAGDSDETTSIFAHKLVLVARSEVFKKILESDEFKASSKQMETV 72
Query: 148 SLPELTHDELSHLLAFLY--TGSLATCTEERHLHALLVAGDKYDVPFLRRACEARLAAGV 205
+L E+ H+EL + F+Y GS+ + + ++H +L A DKY++P LR C L + +
Sbjct: 73 TLSEMKHEELEAFVEFIYRVDGSICSASLKKHARSLFHAADKYEIPHLRDLCRNELISSL 132
Query: 206 EAGNVLRTLEVAELSSSAALKERAMGAVVEHAEEVVFSPEYEEFAVRNAALCVQITRA 263
+ N L LE+A++ AL + A ++ + + E++ F + L V I +A
Sbjct: 133 NSSNALSILELAQIPFDKALNDPAFTTIITNISTIASGDEFKLFVANHPNLAVDIMKA 190
>AT4G08455.1 | chr4:5375891-5376922 FORWARD LENGTH=244
Length = 243
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 5/169 (2%)
Query: 105 IAVRPGTG-PPIQAHKAILATRSEVFRHILAGDDDCKAPAGDSLSLPELTHDELSHLLAF 163
IA G PPI AHK++L +RS VF+ +L +++ + ++ + ++++D L + +
Sbjct: 69 IASEDNAGSPPIPAHKSVLVSRSPVFKAML--ENEMEESLSGTIKISDVSYDALRTFVYY 126
Query: 164 LYTGSLATCTEERHLHALLVAGDKYDVPFLRRACEARLAAGVEAGNVLRTLEVAELSSSA 223
LYT C +E+ LLV +KY V L+ CE L + N L T A ++
Sbjct: 127 LYTAE--ACLDEQMACDLLVMSEKYQVKHLKSYCERFLVTKLSPDNSLMTYAFAHQHNAK 184
Query: 224 ALKERAMGAVVEHAEEVVFSPEYEEFAVRNAALCVQITRALLANKAFPA 272
+ + A+ +VE+ +++ EY E ++ L V+I A L+ + A
Sbjct: 185 HVLDAALSQIVENMDKLTKREEYMELVEKDPRLIVEIYEAYLSKQVNTA 233
>AT5G48510.1 | chr5:19658080-19658882 FORWARD LENGTH=225
Length = 224
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 5/179 (2%)
Query: 92 GFAAAWKDGIHTDIAVRPGT---GPPIQAHKAILATRSEVFRHILAGDD-DCKAPAGDSL 147
G A + D+ ++ G I AHK ILA+RSEVF+++ D+ +++
Sbjct: 13 GLAKVLAEKWQVDVMLKAKNSDEGSAISAHKLILASRSEVFKNMFELDEFKTSTKHVETI 72
Query: 148 SLPELTHDELSHLLAFLYT-GSLATCTEERHLHALLVAGDKYDVPFLRRACEARLAAGVE 206
+L E+ H+EL + F+ + GS+ + ++H +L +A DKY++ LR C L + +
Sbjct: 73 TLSEMKHEELEAFVEFICSDGSMLSANVKQHARSLYLAADKYEILHLRDLCRTELISSLS 132
Query: 207 AGNVLRTLEVAELSSSAALKERAMGAVVEHAEEVVFSPEYEEFAVRNAALCVQITRALL 265
N L L +A++ L + + + + + S E++ F N L V+I + L
Sbjct: 133 LLNSLDLLVLAQIPFDKVLNDESFSYIKNNISTIASSDEFKLFVAGNPNLAVEIMKVSL 191
>AT4G04090.1 | chr4:1964980-1965650 FORWARD LENGTH=193
Length = 192
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 1/152 (0%)
Query: 115 IQAHKAILATRSEVFRHILAGDDDCKAPAGDSLSLPELTHDELSHLLAFLYT-GSLATCT 173
I AHK IL+ RSEVF + D + ++++L E+ H+ L + F Y+ GS+ +
Sbjct: 38 ISAHKRILSARSEVFEEMFESDKYKASSKLETITLSEMKHEVLEAFVDFTYSDGSMLSEK 97
Query: 174 EERHLHALLVAGDKYDVPFLRRACEARLAAGVEAGNVLRTLEVAELSSSAALKERAMGAV 233
++H +L A Y++P L C L A + N LR L++A++ +L A +
Sbjct: 98 AKQHAMSLYSAAKDYEIPRLWCLCRKELIASLNMSNALRVLQLAQIPYDESLSVAAFTTI 157
Query: 234 VEHAEEVVFSPEYEEFAVRNAALCVQITRALL 265
++ S + + F V + ++ITRA+
Sbjct: 158 KNSKLKLSSSTKVKVFVVNHPNGPLEITRAIF 189
>AT2G05330.1 | chr2:1938618-1939470 REVERSE LENGTH=216
Length = 215
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
Query: 120 AILATRSEVFRHILAGDD-DCKAPAGDSLSLPELTHDELSHLLAFLYT-GSLATCTEERH 177
++A+RS V + +L D+ A +++L E+ +EL + FLY+ GS+ + ++H
Sbjct: 33 VMMASRSAVLKKMLESDEFKTSAKQVGTITLLEMKQEELEAFVEFLYSDGSMLSSKVKQH 92
Query: 178 LHALLVAGDKYDVPFLRRACEARLAAGVEAGNVLRTLEVAELSSSAALKERAMGAVVEHA 237
AL A DKY++ LR C + L + + + N L LE+A++ L + A+ +
Sbjct: 93 ARALYRAADKYEILRLRELCRSELISSLNSTNSLNLLELAQIPFDKVLNDAALSYI--KT 150
Query: 238 EEVVFSPEYEEFAV 251
E++F P ++EF +
Sbjct: 151 NELMF-PSFDEFKL 163
>AT1G55760.1 | chr1:20847117-20848507 REVERSE LENGTH=330
Length = 329
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 99 DGIHTDIAVRPGTGPPIQAHKAILATRSEVFRHILAGDDDCKAPAGDSLSLPELTHDELS 158
+ I+TDI + G I AH+A+LA RS VFR + D K +++ ++ D
Sbjct: 160 ESIYTDITINASDGS-IGAHRAVLAARSPVFRSMFLHD--LKEKELSEINVLDMPLDACQ 216
Query: 159 HLLAFLYTGSLATCTEERHLHALLVAGDKYDVPFLRRACEARLAAGVEAGNVLRTLEVAE 218
L+++Y G++ H ALL A +KYD+ L+ AC L ++ NVL L+ A
Sbjct: 217 AFLSYIY-GNIQNEDFLIHRLALLQAAEKYDIADLKEACHLSLLDDIDTKNVLERLQNAY 275
Query: 219 LSSSAALKERAMGAVVEHAEEVVFSPEYEEF 249
L LK M +V+ + E+ F
Sbjct: 276 LYQLPELKASCMRYLVKFGKIFEIRDEFNIF 306
>AT1G21780.1 | chr1:7652476-7653866 FORWARD LENGTH=327
Length = 326
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 4/130 (3%)
Query: 98 KDGIHTDIAVRPGTGPPIQAHKAILATRSEVFRHILAGDDDCKAPAGDSLSLPELTHDEL 157
++ I TD+ + G + AHKAIL+ S VF+ + D ++ + +++ +
Sbjct: 156 EESILTDVIIHTADGT-LSAHKAILSASSTVFKSMFHHD--LMEKESSTIHIDDMSRESC 212
Query: 158 SHLLAFLYTGSLATCTEERHLHALLVAGDKYDVPFLRRACEARLAAGVEAGNVLRTLEVA 217
LL++LY G++ +H ALL A +KYD+ L+ ACE L + + NVL L+ A
Sbjct: 213 MALLSYLY-GNITQEEFWKHRLALLGAANKYDITDLKAACEESLMEDINSSNVLERLQEA 271
Query: 218 ELSSSAALKE 227
L LK+
Sbjct: 272 WLYQLEKLKK 281
>AT2G40440.1 | chr2:16889212-16891292 REVERSE LENGTH=195
Length = 194
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 92 GFAAAWKDGIHTDIAVRPGT----GPPIQAHKAILATRSEVFRHILAGDDDCKAPAGDSL 147
GFA K+ D+ ++ G G AHK +L+ RSEVF+ +L D+ + +++
Sbjct: 13 GFAKILKEQRQVDVRLKAGDSGDEGASTSAHKLVLSARSEVFKKMLESDEIKASAQLETI 72
Query: 148 SLPELTHDELSHLLAFLYT-GSLATCTEERH 177
+L E+ H+EL + F+Y+ GS+ + E++H
Sbjct: 73 TLCEMKHEELEAFIEFIYSDGSMLSAKEKQH 103
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 12/84 (14%)
Query: 92 GFAAAWKDGIHTDIAVRPG-TGPPIQAHKAILATRSEVFRHILAGDDDCKAPAGDSLSLP 150
FA WK+ + D+ ++ G PI AHK ILA SEV + ++ D + A D ++
Sbjct: 114 SFAKYWKEKVGVDVLLKAGDQTDPIPAHKIILAASSEVLKQMI----DSTSSASDPITFS 169
Query: 151 ELTHDELSHLLAFLYTGSLATCTE 174
E+THDE LY L++CT+
Sbjct: 170 EMTHDE-------LYIPLLSSCTK 186
>AT2G39760.1 | chr2:16583213-16585983 FORWARD LENGTH=409
Length = 408
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 70/166 (42%), Gaps = 26/166 (15%)
Query: 72 VKQMRCREEETKQRA-----SFLQQGFAAAWKDGIHTDIAVRPGTGPPIQAHKAILATRS 126
V +R R E KQ S + QG + DIA + G +AHK ILA RS
Sbjct: 158 VGVVRARLEGPKQYGIVLPLSNMGQGLKDLLDSEVGCDIAFQVGD-ETYKAHKLILAARS 216
Query: 127 EVFRHILAGDDDCKAPAG----DSLSLPELTHDELSHLLAFLYT----------GSLATC 172
VFR G P G D + + ++ +L+F+YT GS +
Sbjct: 217 PVFRAQFFG------PIGNNNVDRIVIDDIEPSIFKAMLSFIYTDVLPNVHEITGSTSAS 270
Query: 173 TEERHLHALLVAGDKYDVPFLRRACEARLAAGVEAGNVLRTLEVAE 218
+ + LL A D YD+ L+ CE L ++ NV TL +AE
Sbjct: 271 SFTNMIQHLLAAADLYDLARLKILCEVLLCEKLDVDNVATTLALAE 316
>AT5G13060.1 | chr5:4142958-4146952 FORWARD LENGTH=738
Length = 737
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 6/126 (4%)
Query: 112 GPPIQAHKAILATRSEVFRHILAGDDDCKAPAGDSLSLPELTHDELSHLLAFLYTGSLAT 171
G AHK L S++FR + G K ++ +P + + ++ F+Y+G +
Sbjct: 576 GKQFYAHKIGLVASSDIFRAMFDGL--YKERNAQNVEIPNIRWEVFELMMKFIYSGRINI 633
Query: 172 CTEERHL-HALLVAGDKYDVPFLRRACEARLAAGVEAGNVLRTLEVAELSSSAALKERAM 230
+HL LLVA D+Y + L+R CE +A + N+ E+A+ +++AL+
Sbjct: 634 A---KHLAKDLLVAADQYLLEGLKRQCEYTIAQEICLDNIPEMYELADTFNASALRRACT 690
Query: 231 GAVVEH 236
V+EH
Sbjct: 691 LFVLEH 696
>AT3G43700.1 | chr3:15601944-15603499 FORWARD LENGTH=416
Length = 415
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 19/154 (12%)
Query: 112 GPPIQAHKAILATRSEVFRHILAGDDDCKAPAGDSLSLPELTHDELSHLLAFLYTGSLAT 171
G QAHK +LA RS+ FR + + A + + +L LL F+Y SL
Sbjct: 213 GEKFQAHKLVLAARSQFFRSMFY---NTLAENNSDVVISDLEPKVFKALLHFMYKDSLPG 269
Query: 172 CTEERHLHA----------------LLVAGDKYDVPFLRRACEARLAAGVEAGNVLRTLE 215
E H+ LL A + Y++ LR CE+ + G+ +V + L
Sbjct: 270 DVEPLTAHSFDLLRPSEIDDTLIVKLLAAAEMYNLSRLRLLCESHICKGISISSVSKILA 329
Query: 216 VAELSSSAALKERAMGAVVEHAEEVVFSPEYEEF 249
+++ +++ LK ++ E+ V+ + YE+
Sbjct: 330 LSDKYNASELKSVSLKFTAENLAAVLQTKAYEDL 363
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.132 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,439,309
Number of extensions: 198526
Number of successful extensions: 480
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 469
Number of HSP's successfully gapped: 16
Length of query: 275
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 178
Effective length of database: 8,447,217
Effective search space: 1503604626
Effective search space used: 1503604626
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)