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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0109700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function Cys-rich family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.54 (0.0501) R2 : 0.371
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.21 (0.12) R2dC : 0.142 R2C : 0.118
β3 : 2.71 (0.268) R2dE : 0.144 R2E : 0.0877
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.932 (0.106) R2dN8 : 0.141 R2N8 : 0.0824
σ : 0.938
deviance : 405.94
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_____
C
peak time of C : 1.14
E
wheather : temperature
threshold : 30.08
memory length : 4450
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.98
open length of G : 0.95

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
399.78 0.939 4.52 -0.124 1.22 2.27 0.923 4.41 0.919 1.26 30.02 4277 7.97 0.983
399.82 0.931 4.53 -0.236 1.23 2.77 0.917 -- 0.923 1.2 30.11 4357 8.03 0.917
403.04 0.935 4.52 -0.146 1.22 2.26 -- 4.64 0.906 1.14 30.05 4305 7.94 0.983
403.12 0.935 4.54 -0.328 1.22 2.76 -- -- 0.908 1.15 30.05 4546 8.02 0.897
493.11 1.03 4.49 -0.102 -- 2.28 -- 4.55 0.963 -- 29.8 4239 7.88 0.945
492.93 1.04 4.57 -0.14 1.24 -- 0.962 -- 0.787 1.29 -- -- -- --
496.65 1.04 4.57 -0.173 1.23 -- -- -- 0.782 1.18 -- -- -- --
493.15 1.03 4.52 -0.32 -- 2.77 -- -- 0.958 -- 29.64 4176 7.84 0.924
405.94 0.938 4.54 -- 1.21 2.71 -- -- 0.932 1.14 30.08 4450 7.98 0.95
590.79 1.14 4.55 -0.126 -- -- -- -- 0.807 -- -- -- -- --
497.44 1.04 4.57 -- 1.23 -- -- -- 0.801 1.17 -- -- -- --
495.76 1.04 4.51 -- -- 2.74 -- -- 0.985 -- 29.68 4177 7.81 0.956
591.21 1.13 4.55 -- -- -- -- -- 0.821 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 401.05 temperature 30 4320 > th dose dependent rect. 8 1
15 403.94 temperature 30 4320 > th dose independent rect. 8 1
43 406.48 radiation 40 1440 < th dose independent rect. 19 14
44 406.89 radiation 40 1440 < th dose independent rect. 8 1
45 407.44 temperature 30 4320 < th dose independent rect. 23 10
46 407.45 radiation 40 1440 < th dose independent rect. 17 16
47 407.55 temperature 30 4320 < th dose independent rect. 8 1
49 408.26 radiation 40 1440 > th dose independent rect. 8 1
70 408.90 radiation 40 1440 < th dose independent rect. 22 11
73 409.26 temperature 30 4320 < th dose independent rect. 3 6
79 409.88 temperature 30 4320 < th dose independent rect. 6 3
83 410.48 radiation 40 1440 < th dose independent rect. 3 6
84 410.50 radiation 40 1440 < th dose independent rect. 1 8
170 423.83 radiation 30 4320 > th dose dependent rect. 15 18
187 425.00 radiation 30 4320 > th dose dependent rect. 7 2
215 427.52 radiation 1 4320 > th dose dependent rect. 18 12
219 427.61 radiation 40 4320 < th dose independent sin 12 NA
222 427.96 radiation 10 4320 > th dose dependent rect. 16 16
223 428.10 wind 3 43200 < th dose dependent rect. 1 4
224 428.61 temperature 30 4320 > th dose dependent rect. 11 1
239 428.88 temperature 30 4320 < th dose independent sin 8 NA
240 428.93 temperature 30 4320 > th dose independent sin 8 NA
245 429.53 radiation 30 4320 > th dose dependent sin 12 NA
251 429.85 radiation 20 4320 < th dose independent rect. 16 16
254 430.34 radiation 1 4320 > th dose dependent rect. 4 2
303 431.02 radiation 30 4320 < th dose dependent rect. 18 10
325 431.42 radiation 20 4320 < th dose dependent rect. 18 8
327 431.47 temperature 30 4320 < th dose independent rect. 23 15
330 431.50 temperature 30 4320 < th dose independent rect. 8 6
337 431.52 temperature 30 4320 < th dose independent rect. 3 11
348 431.58 temperature 30 4320 < th dose independent rect. 6 8
372 431.66 radiation 20 4320 < th dose independent rect. 19 13
383 431.79 radiation 20 4320 < th dose independent rect. 5 3
385 431.80 radiation 20 4320 < th dose independent rect. 22 10
386 431.82 radiation 20 4320 < th dose independent rect. 3 5
387 431.83 radiation 20 4320 < th dose independent rect. 1 7
389 431.84 radiation 10 4320 < th dose independent sin 12 NA
435 432.06 temperature 30 4320 > th dose dependent sin 8 NA
442 432.17 wind 1 43200 > th dose dependent rect. 23 13
461 432.23 radiation 40 4320 < th dose dependent rect. 18 12
473 432.32 radiation 1 4320 > th dose dependent rect. 17 2
485 432.33 wind 5 43200 < th dose dependent rect. 24 12
495 432.39 radiation 10 4320 > th dose dependent sin 12 NA
502 432.45 wind 9 43200 < th dose dependent rect. 24 12
511 432.53 radiation 40 4320 > th dose dependent rect. 13 22
542 432.77 radiation 40 4320 < th dose independent rect. 14 10
549 432.79 radiation 40 4320 < th dose independent rect. 14 14
553 432.80 radiation 40 4320 < th dose independent rect. 14 12
575 432.91 radiation 40 4320 < th dose independent rect. 14 7
580 432.93 radiation 40 4320 < th dose independent rect. 14 2
590 433.03 radiation 40 4320 < th dose independent rect. 14 4
592 433.05 radiation 10 4320 < th dose dependent rect. 18 3
608 433.16 temperature 30 4320 > th dose independent rect. 11 1
611 433.16 wind 9 43200 < th dose dependent rect. 24 7
650 433.41 radiation 10 4320 < th dose independent rect. 13 19
655 433.46 wind 1 43200 > th dose dependent rect. 24 7
662 433.55 radiation 10 4320 > th dose independent rect. 17 13
672 433.65 wind 3 43200 < th dose independent rect. 2 3
676 433.67 wind 3 43200 < th dose independent rect. 3 1
677 433.67 wind 9 43200 < th dose dependent rect. 24 9
712 433.86 wind 1 43200 > th dose dependent rect. 24 4
722 433.93 wind 9 43200 < th dose dependent rect. 3 4
732 433.97 temperature 30 4320 < th dose independent rect. 11 1
749 434.08 wind 1 43200 > th dose dependent rect. 3 4
768 434.13 radiation 10 4320 < th dose independent rect. 16 22
791 434.28 wind 3 43200 > th dose independent rect. 3 1
802 434.33 radiation 40 4320 < th dose dependent rect. 16 16
825 434.44 wind 3 43200 < th dose independent rect. 24 5
901 434.79 radiation 10 4320 < th dose independent rect. 17 1
908 434.82 wind 1 43200 > th dose dependent sin 7 NA
960 435.04 wind 9 43200 < th dose dependent sin 7 NA
964 435.06 radiation 10 4320 > th dose independent rect. 17 1