BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0109700 Os12g0109700|AK058609
         (219 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G05350.1  | chr5:1585757-1587337 FORWARD LENGTH=527             73   1e-13
AT3G10980.1  | chr3:3438810-3440501 FORWARD LENGTH=564             49   3e-06

>AT5G05350.1 | chr5:1585757-1587337 FORWARD LENGTH=527
          Length = 526

 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 39/57 (68%)

Query: 32  WRIQMRERFGLPASAACCGSPSVTDYARWLFCWPCALAQEVRTASLYHIDGETFYKK 88
           WRIQMR+RF LP    CCG P++ D   WLFC  C+LAQEVRTA+ Y I  + F K+
Sbjct: 396 WRIQMRKRFKLPGYNICCGRPAIADCTLWLFCCWCSLAQEVRTANSYEIVEDKFCKR 452



>AT3G10980.1 | chr3:3438810-3440501 FORWARD LENGTH=564
          Length = 563

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 38/57 (66%)

Query: 32  WRIQMRERFGLPASAACCGSPSVTDYARWLFCWPCALAQEVRTASLYHIDGETFYKK 88
           WRIQMR+RF LP+   C G  ++ D A WL C  C+LAQEVRTA+ Y I  + F ++
Sbjct: 425 WRIQMRKRFKLPSYNFCFGRAAIADCALWLCCCWCSLAQEVRTANSYEIVEDKFCQR 481



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.135    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,474,301
Number of extensions: 111933
Number of successful extensions: 251
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 2
Length of query: 219
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 124
Effective length of database: 8,502,049
Effective search space: 1054254076
Effective search space used: 1054254076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)