Os12g0103300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sec61beta family protein.
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Os12g0103300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sec61beta family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.26 | 0.267 | 10.6 | -0.198 | 0.198 | 0.904 | -0.544 | 1.39 | -0.103 | 4.33 | 25.47 | 156 | -- | -- |
| 34.7 | 0.276 | 10.5 | 0.00491 | 0.233 | 0.778 | -0.12 | -- | -0.0554 | 5.75 | 25.8 | 139 | -- | -- |
| 32.88 | 0.267 | 10.5 | -0.148 | 0.217 | 0.919 | -- | 1.18 | -0.0873 | 5.03 | 25.27 | 139 | -- | -- |
| 34.54 | 0.274 | 10.5 | 0.0242 | 0.208 | 0.815 | -- | -- | -0.0593 | 5.22 | 25.81 | 80 | -- | -- |
| 34.54 | 0.274 | 10.5 | -0.112 | -- | 0.979 | -- | 1.08 | -0.0575 | -- | 26.13 | 158 | -- | -- |
| 43.85 | 0.31 | 10.6 | -0.178 | 0.358 | -- | -0.0976 | -- | -0.221 | 4 | -- | -- | -- | -- |
| 43.88 | 0.31 | 10.6 | -0.177 | 0.357 | -- | -- | -- | -0.221 | 4 | -- | -- | -- | -- |
| 36.24 | 0.28 | 10.5 | 0.0814 | -- | 0.903 | -- | -- | -0.00947 | -- | 27.04 | 105 | -- | -- |
| 34.52 | 0.274 | 10.5 | -- | 0.219 | 0.789 | -- | -- | -0.0572 | 5.27 | 25.71 | 80 | -- | -- |
| 50.85 | 0.333 | 10.6 | -0.162 | -- | -- | -- | -- | -0.211 | -- | -- | -- | -- | -- |
| 44.7 | 0.313 | 10.6 | -- | 0.354 | -- | -- | -- | -0.201 | 4 | -- | -- | -- | -- |
| 36.21 | 0.28 | 10.5 | -- | -- | 0.882 | -- | -- | -0.0358 | -- | 26.96 | 131 | -- | -- |
| 51.54 | 0.335 | 10.6 | -- | -- | -- | -- | -- | -0.193 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.62 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 2 | 31.83 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 27 | 32.62 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 31 | 32.72 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 32 | 32.73 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 20 |
| 33 | 32.73 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 37 | 32.76 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 42 | 32.81 | temperature | 25 | 720 | > th | dose independent | rect. | 14 | 11 |
| 49 | 32.84 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 56 | 32.87 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 57 | 32.87 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 65 | 32.92 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 67 | 32.93 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 71 | 32.94 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 15 |
| 106 | 33.05 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 126 | 33.13 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 127 | 33.13 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 17 |
| 202 | 33.38 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 12 |
| 276 | 33.53 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 14 |
| 352 | 33.72 | temperature | 25 | 720 | < th | dose dependent | sin | 19 | NA |
| 428 | 33.93 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 4 |
| 435 | 33.95 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 492 | 34.08 | temperature | 20 | 270 | > th | dose dependent | sin | 11 | NA |
| 500 | 34.10 | temperature | 25 | 270 | < th | dose dependent | sin | 11 | NA |
| 515 | 34.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 6 |
| 552 | 34.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 10 |
| 582 | 34.30 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 23 |
| 667 | 34.47 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 21 |
| 674 | 34.48 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 23 |
| 738 | 34.61 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 753 | 34.64 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 779 | 34.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 807 | 34.75 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 839 | 34.80 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 849 | 34.82 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 7 |
| 866 | 34.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 909 | 34.93 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 23 |
| 960 | 35.02 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 23 |
| 976 | 35.05 | temperature | 25 | 720 | < th | dose independent | rect. | 20 | 23 |
| 990 | 35.09 | temperature | 25 | 720 | > th | dose independent | rect. | 22 | 23 |