Os11g0707700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Elongin C (Fragment).
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Os11g0707700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Elongin C (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.53 | 0.218 | 11.4 | -0.697 | 0.33 | 0.588 | -0.166 | -2.53 | -0.28 | 12 | 9.04 | 797 | -- | -- |
| 25.83 | 0.239 | 11.4 | -0.233 | 0.085 | 0.695 | 0.228 | -- | -0.168 | 9.64 | 6.51 | 703 | -- | -- |
| 21.63 | 0.217 | 11.4 | -0.679 | 0.329 | 0.594 | -- | -2.4 | -0.273 | 12 | 8.925 | 780 | -- | -- |
| 25.94 | 0.237 | 11.4 | -0.222 | 0.0918 | 0.681 | -- | -- | -0.164 | 10.3 | 8.629 | 14 | -- | -- |
| 24.65 | 0.232 | 11.4 | -0.432 | -- | 0.767 | -- | -1.44 | -0.228 | -- | 10.17 | 1624 | -- | -- |
| 30.27 | 0.258 | 11.4 | -0.0949 | 0.251 | -- | 0.183 | -- | -0.0702 | 13.1 | -- | -- | -- | -- |
| 30.41 | 0.258 | 11.4 | -0.0882 | 0.251 | -- | -- | -- | -0.0691 | 13.2 | -- | -- | -- | -- |
| 26.37 | 0.239 | 11.4 | -0.234 | -- | 0.745 | -- | -- | -0.174 | -- | 10.92 | 9 | -- | -- |
| 27.12 | 0.243 | 11.4 | -- | 0.111 | 0.576 | -- | -- | -0.128 | 11.4 | 6.383 | 14 | -- | -- |
| 34.32 | 0.274 | 11.4 | -0.0979 | -- | -- | -- | -- | -0.0741 | -- | -- | -- | -- | -- |
| 30.61 | 0.259 | 11.4 | -- | 0.253 | -- | -- | -- | -0.0592 | 13.2 | -- | -- | -- | -- |
| 27.73 | 0.245 | 11.4 | -- | -- | 0.672 | -- | -- | -0.14 | -- | 8.834 | 8 | -- | -- |
| 34.57 | 0.274 | 11.4 | -- | -- | -- | -- | -- | -0.0633 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 17 |
| 4 | 20.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 5 | 20.55 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 6 | 20.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 52 | 20.86 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 57 | 20.87 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 99 | 21.05 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 138 | 21.17 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 156 | 21.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 158 | 21.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 177 | 21.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 277 | 21.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 300 | 21.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 319 | 21.43 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 16 |
| 350 | 21.46 | temperature | 30 | 1440 | < th | dose dependent | sin | 19 | NA |
| 436 | 21.52 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 461 | 21.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 473 | 21.57 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 483 | 21.58 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 489 | 21.59 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 500 | 21.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 513 | 21.61 | temperature | 15 | 1440 | > th | dose dependent | sin | 18 | NA |
| 604 | 21.68 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 660 | 21.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 756 | 21.78 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 786 | 21.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 876 | 21.87 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 892 | 21.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 910 | 21.89 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 11 |
| 913 | 21.89 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 1 |