BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0707700 Os11g0707700|AK064106
         (124 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G59140.1  | chr5:23874696-23875631 REVERSE LENGTH=97           152   4e-38

>AT5G59140.1 | chr5:23874696-23875631 REVERSE LENGTH=97
          Length = 96

 Score =  152 bits (385), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 73/93 (78%), Positives = 83/93 (89%), Gaps = 1/93 (1%)

Query: 32  VKLISAEGFEFVVDKKAAMVSNTLRNMLTSPGGFSETREGEVRFPEISTPILEKICQYFY 91
           VKLIS EGFEFV+D++AAMVS T+R+MLTSPGGFSE+++G V FP+IST ILEKICQYFY
Sbjct: 5   VKLISMEGFEFVIDREAAMVSQTIRSMLTSPGGFSESKDGVVTFPDISTTILEKICQYFY 64

Query: 92  WSLHYSSGKETSEFQIEPEITLELMMAANYLDT 124
           WSL YS GKET EF IEPE+TLELMMAANYL T
Sbjct: 65  WSLQYSRGKET-EFHIEPELTLELMMAANYLHT 96



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,628,408
Number of extensions: 93028
Number of successful extensions: 180
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 38
Effective length of database: 8,748,793
Effective search space: 332454134
Effective search space used: 332454134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 105 (45.1 bits)