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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0701900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 18 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.0323) R2 : 0.541
β1 : -0.358 (0.125) R2dD : 0.00974 R2D : 0.0486
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.65 (0.11) R2dE : 0.263 R2E : 0.391
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -3.04 (0.312) R2dD*E : 0.118 R2D*E : 0.249
γ1 : -0.00472 (0.07) R2dN8 : -1.48e-06 R2N8 : -0.0013
σ : 0.591
deviance : 161.21
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.4
memory length : 376
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 9.28
open length of G : 1.33

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
160.14 0.595 3.05 -0.355 0.137 1.63 0.988 -3.53 0.0118 9.83 24.48 370 9.04 1.88
194.44 0.649 3.12 -0.605 0.217 1.98 -0.0693 -- -0.0468 8.78 24.4 377 8.92 1.75
159.84 0.589 3.07 -0.383 0.163 1.6 -- -2.97 -0.0182 9.72 24.4 376 9.3 1.32
192.63 0.646 3.11 -0.717 0.153 1.79 -- -- -0.112 9.35 24.4 377 8.95 1.69
161.21 0.591 3.06 -0.358 -- 1.65 -- -3.04 -0.00472 -- 24.4 376 9.28 1.33
250.92 0.743 3.17 -1.09 0.752 -- -2.27 -- -0.352 13 -- -- -- --
271.56 0.772 3.17 -1.18 0.762 -- -- -- -0.367 12.3 -- -- -- --
193.35 0.648 3.12 -0.738 -- 1.87 -- -- -0.0806 -- 24.37 381 8.92 1.66
206.36 0.669 3.1 -- 0.0992 1.96 -- -- -0.000398 9.28 24.3 386 8.98 1.62
308.03 0.82 3.18 -1.2 -- -- -- -- -0.379 -- -- -- -- --
308.2 0.821 3.14 -- 0.778 -- -- -- -0.236 12.4 -- -- -- --
206.86 0.67 3.1 -- -- 2.02 -- -- 0.0122 -- 24.3 383 8.99 1.6
346.29 0.869 3.15 -- -- -- -- -- -0.245 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 172.24 temperature 25 270 < th dose independent rect. 9 2
2 172.70 temperature 20 720 < th dose dependent rect. 4 1
5 174.24 temperature 25 270 < th dose independent rect. 8 5
7 174.81 temperature 25 720 < th dose dependent rect. 2 9
8 174.92 temperature 25 720 < th dose dependent rect. 3 7
14 175.52 temperature 30 720 < th dose dependent rect. 1 12
15 175.52 temperature 30 720 < th dose dependent rect. 24 14
25 176.44 temperature 15 720 > th dose dependent rect. 2 8
27 176.49 temperature 30 720 < th dose dependent sin 6 NA
44 177.16 temperature 30 270 < th dose dependent rect. 8 6
65 178.28 temperature 20 720 > th dose independent rect. 2 8
77 178.67 temperature 10 720 > th dose dependent sin 6 NA
104 179.67 temperature 20 720 < th dose independent rect. 5 2
136 180.65 temperature 20 720 < th dose independent rect. 3 7
138 180.67 temperature 15 720 > th dose dependent rect. 23 15
147 180.80 temperature 15 720 > th dose dependent rect. 1 13
164 181.26 temperature 20 720 < th dose independent rect. 2 9
238 182.81 temperature 20 720 < th dose independent rect. 1 13
254 182.97 temperature 30 270 < th dose dependent rect. 9 2
280 183.48 temperature 20 720 > th dose independent rect. 1 14
289 183.67 temperature 20 720 > th dose independent sin 5 NA
339 184.44 temperature 20 720 < th dose independent sin 5 NA
519 187.01 temperature 15 1440 > th dose dependent rect. 3 1
609 188.24 atmosphere 1010 720 > th dose independent rect. 3 12
623 188.45 atmosphere 1010 720 > th dose independent rect. 7 7
656 188.77 atmosphere 1010 720 > th dose independent sin 3 NA
686 189.20 temperature 20 270 > th dose dependent rect. 4 15
702 189.35 atmosphere 1010 720 < th dose independent rect. 3 14
744 189.72 temperature 20 1440 < th dose independent rect. 21 2
758 189.86 atmosphere 1010 720 < th dose independent rect. 3 12
774 190.01 temperature 20 1440 > th dose independent rect. 21 2
835 190.61 atmosphere 1010 720 < th dose independent rect. 5 10
868 190.91 atmosphere 1010 720 < th dose independent sin 3 NA
872 190.92 temperature 30 270 < th dose dependent rect. 8 13
877 190.95 temperature 30 270 < th dose dependent rect. 7 20