BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0701900 Os11g0701900|AK064281
         (300 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24090.1  | chr5:8143805-8145153 REVERSE LENGTH=303            166   1e-41

>AT5G24090.1 | chr5:8143805-8145153 REVERSE LENGTH=303
          Length = 302

 Score =  166 bits (420), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 162/293 (55%), Gaps = 18/293 (6%)

Query: 15  FVVIVLLILAGPGPVAGDKTGELTVFWGRNKDEGSLREACDTGIYNTVIISFLTVFGHGR 74
           F+  +   L+ P   +    G + ++WG+N +EG+L   C TG Y  V ++FL  FG+G+
Sbjct: 13  FLFFISCSLSKPSDAS---RGGIAIYWGQNGNEGNLSATCATGRYAYVNVAFLVKFGNGQ 69

Query: 75  Y-WADLSGH--PVAGV----GADIKHCQHAKNVTVLLSIGGDGDQYSLPTPRSAKDVADH 127
               +L+GH  P A      G+ +K CQ ++ + V+LS+GG    YS+ +   AK +AD+
Sbjct: 70  TPELNLAGHCNPAANTCTHFGSQVKDCQ-SRGIKVMLSLGGGIGNYSIGSREDAKVIADY 128

Query: 128 LWHAYLGGGRHGVFRPFGDAVVDGIDLYIDHGGSANYDELAKRLGE--HGG--VLLTATV 183
           LW+ +LGG      RP GDAV+DGID  I+ G   ++D+LA+ L +  H G  + LT   
Sbjct: 129 LWNNFLGGKSSS--RPLGDAVLDGIDFNIELGSPQHWDDLARTLSKFSHRGRKIYLTGAP 186

Query: 184 RCMDGQETSGEAAVATGLIGRIHVRFYDDRRCSYDSSERRPFYGAWLGWTARYANASVHV 243
           +C       G +A+ T     + ++FY++  CSY S   +  + +W  WT   A     +
Sbjct: 187 QCPFPDRLMG-SALNTKRFDYVWIQFYNNPPCSYSSGNTQNLFDSWNKWTTSIAAQKFFL 245

Query: 244 GLPAAWDAASDGWINPAALVFDALPLVRGTPNYGGVVLWNRHFDRRSRYGQTI 296
           GLPAA +AA  G+I P  L    LP ++ +  YGGV+LW++ +D ++ Y  +I
Sbjct: 246 GLPAAPEAAGSGYIPPDVLTSQILPTLKKSRKYGGVMLWSKFWDDKNGYSSSI 298



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.140    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,181,211
Number of extensions: 324789
Number of successful extensions: 619
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 616
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 202
Effective length of database: 8,419,801
Effective search space: 1700799802
Effective search space used: 1700799802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)