Os11g0701500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Class III chitinase homologue (OsChib3H-g) (Fragment).
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Os11g0701500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Class III chitinase homologue (OsChib3H-g) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 148.68 | 0.573 | 2.89 | 0.155 | 0.125 | 3.11 | -0.0717 | 6.83 | 0.131 | 1.88 | 24.78 | 659 | 11 | 2.05 |
| 172.08 | 0.611 | 2.8 | 0.302 | 0.105 | 1 | -0.451 | -- | 0.243 | 1.74 | 28.58 | 648 | 10.8 | 3.16 |
| 147.98 | 0.567 | 2.9 | 0.18 | 0.109 | 3.41 | -- | 7.66 | 0.127 | 0.335 | 24.44 | 663 | 11 | 2.05 |
| 172.08 | 0.611 | 2.79 | 0.3 | 0.13 | 0.968 | -- | -- | 0.24 | 2.58 | 29.7 | 640 | 11.4 | 2.24 |
| 147.93 | 0.566 | 2.9 | 0.222 | -- | 4.01 | -- | 8.74 | 0.14 | -- | 24.16 | 653 | 11.1 | 2.08 |
| 180.18 | 0.629 | 2.84 | 0.16 | 0.0717 | -- | 0.943 | -- | 0.0857 | 17.4 | -- | -- | -- | -- |
| 182.05 | 0.632 | 2.84 | 0.156 | 0.108 | -- | -- | -- | 0.0892 | 20.2 | -- | -- | -- | -- |
| 172.6 | 0.612 | 2.82 | 0.289 | -- | 0.89 | -- | -- | 0.173 | -- | 29.03 | 618 | 11.7 | 2.27 |
| 174.81 | 0.616 | 2.81 | -- | 0.131 | 0.98 | -- | -- | 0.213 | 2.55 | 29.71 | 631 | 11.5 | 2.3 |
| 182.7 | 0.632 | 2.84 | 0.155 | -- | -- | -- | -- | 0.088 | -- | -- | -- | -- | -- |
| 182.69 | 0.632 | 2.85 | -- | 0.107 | -- | -- | -- | 0.0718 | 20.3 | -- | -- | -- | -- |
| 174.08 | 0.614 | 2.84 | -- | -- | 0.961 | -- | -- | 0.106 | -- | 26.78 | 597 | 12.2 | 1.78 |
| 183.33 | 0.632 | 2.84 | -- | -- | -- | -- | -- | 0.0708 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.14 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 11 | 2 |
| 2 | 153.25 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 10 | 4 |
| 4 | 154.33 | wind | 5.0 | 30 | > th | dose dependent | rect. | 20 | 2 |
| 12 | 156.90 | wind | 5.0 | 30 | > th | dose independent | rect. | 20 | 2 |
| 23 | 159.38 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 8 |
| 42 | 161.51 | wind | 5.0 | 30 | > th | dose dependent | rect. | 20 | 10 |
| 59 | 162.25 | temperature | 25.0 | 720 | < th | dose independent | rect. | 10 | 4 |
| 66 | 162.27 | temperature | 25.0 | 720 | < th | dose independent | rect. | 11 | 2 |
| 75 | 162.62 | wind | 5.0 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 77 | 162.65 | wind | 5.0 | 90 | > th | dose independent | rect. | 13 | 1 |
| 119 | 163.73 | wind | 5.0 | 720 | > th | dose independent | rect. | 11 | 2 |
| 140 | 164.20 | wind | 7.0 | 30 | > th | dose dependent | rect. | 17 | 5 |
| 150 | 164.32 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 19 | 3 |
| 152 | 164.32 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 19 | 3 |
| 173 | 164.80 | wind | 7.0 | 30 | > th | dose dependent | sin | 11 | NA |
| 175 | 164.82 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 11 | 12 |
| 178 | 164.87 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 21 | 1 |
| 180 | 164.87 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 21 | 1 |
| 243 | 164.99 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 21 | 1 |
| 255 | 164.99 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 21 | 1 |
| 374 | 165.99 | temperature | 25.0 | 90 | < th | dose independent | rect. | 12 | 10 |
| 378 | 166.03 | wind | 7.0 | 30 | > th | dose independent | sin | 11 | NA |
| 401 | 166.22 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 18 | 9 |
| 402 | 166.23 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 18 | 9 |
| 430 | 166.32 | temperature | 25.0 | 720 | > th | dose independent | rect. | 8 | 9 |
| 488 | 166.59 | wind | 3.0 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 490 | 166.64 | temperature | 25.0 | 720 | < th | dose independent | rect. | 13 | 1 |
| 509 | 166.77 | wind | 5.0 | 10 | > th | dose independent | rect. | 13 | 1 |
| 556 | 167.11 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 17 | 6 |
| 578 | 167.17 | wind | 7.0 | 30 | < th | dose independent | sin | 11 | NA |
| 579 | 167.17 | temperature | 25.0 | 720 | < th | dose independent | rect. | 2 | 17 |
| 580 | 167.17 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 16 | 6 |
| 583 | 167.18 | temperature | 25.0 | 10 | < th | dose independent | rect. | 12 | 11 |
| 607 | 167.30 | temperature | 25.0 | 720 | < th | dose independent | sin | 0 | NA |
| 608 | 167.31 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 18 | 1 |
| 674 | 167.71 | temperature | 25.0 | 720 | > th | dose independent | sin | 0 | NA |
| 814 | 168.06 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 830 | 168.15 | wind | 5.0 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 892 | 168.30 | precipitation | 0.1 | 30 | > th | dose independent | sin | 16 | NA |
| 905 | 168.35 | wind | 5.0 | 720 | < th | dose independent | rect. | 7 | 8 |
| 911 | 168.38 | precipitation | 0.1 | 30 | > th | dose dependent | sin | 16 | NA |
| 917 | 168.41 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 8 | 8 |
| 931 | 168.48 | temperature | 25.0 | 90 | < th | dose independent | rect. | 20 | 1 |
| 974 | 168.63 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 20 | 3 |
| 975 | 168.64 | wind | 7.0 | 720 | > th | dose independent | rect. | 8 | 1 |
| 977 | 168.64 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 19 | 3 |