BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0701500 Os11g0701500|AK058882
         (284 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24090.1  | chr5:8143805-8145153 REVERSE LENGTH=303            170   7e-43

>AT5G24090.1 | chr5:8143805-8145153 REVERSE LENGTH=303
          Length = 302

 Score =  170 bits (431), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 102/285 (35%), Positives = 152/285 (53%), Gaps = 23/285 (8%)

Query: 17  SGQLAAPVTADGYVGQLAVFWGRHKEEGSLREACDTGRYNIVVITFYNVFGYQRGRYGLD 76
           S  L+ P  +D   G +A++WG++  EG+L   C TGRY  V + F   FG  +    L+
Sbjct: 18  SCSLSKP--SDASRGGIAIYWGQNGNEGNLSATCATGRYAYVNVAFLVKFGNGQTPE-LN 74

Query: 77  FSGH--PVAAV----GADIKHCQSKGVQVLLSIGGQGGEYSLPSSQSASDVADNLWNAYL 130
            +GH  P A      G+ +K CQS+G++V+LS+GG  G YS+ S + A  +AD LWN +L
Sbjct: 75  LAGHCNPAANTCTHFGSQVKDCQSRGIKVMLSLGGGIGNYSIGSREDAKVIADYLWNNFL 134

Query: 131 GGRRAGVPRPFGDAVVDGIDFFIDQGGADHYEQLARQL-----HGRGVLLTATVRCAYPD 185
           GG+ +   RP GDAV+DGIDF I+ G   H++ LAR L      GR + LT   +C +PD
Sbjct: 135 GGKSSS--RPLGDAVLDGIDFNIELGSPQHWDDLARTLSKFSHRGRKIYLTGAPQCPFPD 192

Query: 186 SRMEAALATGVFARIHVRIFGDDQC------TMFPKDAWEKWAAAYPRCTVFLTVVASPE 239
             M +AL T  F  + ++ + +  C      T    D+W KW  +      FL + A+PE
Sbjct: 193 RLMGSALNTKRFDYVWIQFYNNPPCSYSSGNTQNLFDSWNKWTTSIAAQKFFLGLPAAPE 252

Query: 240 -QDEGYMFQKDLYYGVQQFIDKEPNYGGIAIWDRYYDKKANYSGE 283
               GY+    L   +   + K   YGG+ +W +++D K  YS  
Sbjct: 253 AAGSGYIPPDVLTSQILPTLKKSRKYGGVMLWSKFWDDKNGYSSS 297



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,362,736
Number of extensions: 275803
Number of successful extensions: 499
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 494
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 187
Effective length of database: 8,447,217
Effective search space: 1579629579
Effective search space used: 1579629579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)