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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0687200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : von Willebrand factor, type A domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.33 (0.0531) R2 : 0.552
β1 : -2.06 (0.24) R2dD : 0.132 R2D : -0.0103
β2 : 0.639 (0.131) R2dC : 0.0228 R2C : -0.0308
β3 : 1.75 (0.206) R2dE : 0.145 R2E : 0.0797
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.47 (0.131) R2dN8 : 0.252 R2N8 : 0.388
σ : 0.938
deviance : 405.6
__
_____
C
peak time of C : 6.04
E
wheather : temperature
threshold : 21.3
memory length : 9154
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
395.43 0.934 4.42 -2.72 0.65 1.9 -0.219 -5.4 1.51 7.16 26.3 3933 -- --
406.83 0.939 4.31 -1.94 0.581 1.74 0.0161 -- 1.53 6.72 21.3 9251 -- --
395.24 0.926 4.41 -2.68 0.656 1.89 -- -5.42 1.57 7.04 26.4 3921 -- --
405.6 0.938 4.33 -2.06 0.639 1.75 -- -- 1.47 6.04 21.3 9154 -- --
415.73 0.95 4.42 -2.66 -- 1.91 -- -5.41 1.59 -- 26.4 4093 -- --
471.58 1.02 4.18 -0.773 0.634 -- 0.0908 -- 2.13 5.83 -- -- -- --
471.6 1.02 4.18 -0.772 0.635 -- -- -- 2.13 5.85 -- -- -- --
422.63 0.957 4.31 -1.34 -- 1.52 -- -- 1.62 -- 24.4 2697 -- --
450.53 0.989 4.22 -- 0.54 1.1 -- -- 1.94 6.12 25.56 2809 -- --
492.5 1.04 4.19 -0.753 -- -- -- -- 2.14 -- -- -- -- --
487.31 1.03 4.16 -- 0.623 -- -- -- 2.21 5.91 -- -- -- --
464.75 1 4.23 -- -- 1.22 -- -- 1.96 -- 24.91 2737 -- --
507.45 1.05 4.17 -- -- -- -- -- 2.22 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 393.03 radiation 1.0 43200 < th dose dependent rect. 4 1
2 393.10 radiation 1.0 43200 < th dose dependent rect. 2 3
9 394.38 radiation 1.0 43200 < th dose dependent rect. 19 10
11 395.32 temperature 25.0 4320 < th dose independent rect. 17 1
12 395.34 temperature 25.0 4320 > th dose independent rect. 17 1
13 396.46 radiation 1.0 14400 > th dose independent rect. 18 1
24 396.89 temperature 25.0 4320 > th dose independent rect. 16 4
27 397.44 temperature 25.0 4320 < th dose independent rect. 16 4
34 398.27 radiation 1.0 43200 < th dose independent rect. 18 3
37 398.30 radiation 1.0 43200 < th dose independent rect. 18 8
74 401.09 temperature 25.0 4320 > th dose independent rect. 10 12
75 401.21 radiation 1.0 14400 < th dose independent rect. 9 3
76 401.22 temperature 25.0 4320 > th dose independent rect. 11 1
85 401.57 precipitation 0.1 14400 < th dose independent rect. 1 8
86 401.57 precipitation 0.1 14400 < th dose dependent rect. 1 8
98 401.84 precipitation 0.1 14400 > th dose independent rect. 1 8
101 401.92 temperature 25.0 4320 < th dose independent rect. 10 12
112 402.20 radiation 1.0 14400 > th dose independent rect. 9 3
116 402.27 precipitation 0.1 14400 > th dose dependent rect. 1 8
123 402.42 temperature 25.0 4320 < th dose independent rect. 10 2
136 402.81 temperature 20.0 14400 < th dose independent rect. 5 1
160 403.16 radiation 1.0 43200 > th dose dependent rect. 18 1
172 403.19 temperature 25.0 4320 > th dose independent sin 20 NA
184 403.35 temperature 20.0 14400 < th dose dependent rect. 23 3
201 403.55 radiation 1.0 43200 < th dose dependent rect. 18 2
218 403.67 radiation 1.0 4320 < th dose dependent rect. 18 11
219 403.68 humidity 60.0 43200 < th dose independent rect. 24 12
232 403.82 temperature 25.0 4320 < th dose independent sin 20 NA
233 403.82 humidity 60.0 43200 < th dose independent rect. 11 1
264 404.15 temperature 20.0 14400 > th dose independent rect. 5 1
277 404.29 humidity 60.0 43200 < th dose independent rect. 6 6
291 404.41 humidity 60.0 43200 < th dose independent rect. 8 4
316 404.65 temperature 25.0 4320 > th dose independent rect. 7 6
317 404.67 temperature 20.0 14400 < th dose independent rect. 23 1
345 404.82 humidity 60.0 43200 > th dose independent rect. 1 11
346 404.83 temperature 20.0 14400 < th dose independent rect. 1 1
348 404.85 radiation 20.0 43200 < th dose dependent rect. 2 3
362 404.92 radiation 1.0 4320 < th dose dependent rect. 18 3
391 405.17 temperature 20.0 14400 < th dose independent rect. 22 4
395 405.18 humidity 60.0 43200 > th dose independent rect. 6 6
412 405.28 humidity 60.0 43200 > th dose independent rect. 8 4
418 405.35 temperature 20.0 14400 > th dose independent rect. 23 1
452 405.64 temperature 25.0 4320 > th dose dependent rect. 17 1
467 405.76 radiation 10.0 43200 < th dose independent rect. 14 4
470 405.79 radiation 10.0 43200 < th dose independent rect. 14 8
473 405.79 temperature 20.0 14400 < th dose dependent sin 11 NA
494 405.86 radiation 10.0 43200 < th dose independent rect. 16 1
498 405.87 temperature 20.0 14400 < th dose independent rect. 18 13
525 405.95 temperature 20.0 14400 < th dose independent rect. 22 9
540 406.01 temperature 20.0 14400 > th dose independent rect. 1 1
541 406.01 temperature 20.0 14400 > th dose independent rect. 22 4
544 406.02 radiation 1.0 43200 < th dose independent rect. 13 1
547 406.02 radiation 1.0 43200 < th dose dependent rect. 13 1
549 406.03 radiation 1.0 43200 > th dose independent rect. 13 1
576 406.11 radiation 40.0 43200 < th dose independent rect. 12 10
577 406.11 radiation 40.0 43200 < th dose independent rect. 12 12
579 406.12 radiation 10.0 43200 < th dose independent sin 16 NA
580 406.12 radiation 40.0 43200 < th dose independent rect. 12 4
589 406.12 radiation 40.0 43200 < th dose independent rect. 12 15
596 406.13 radiation 10.0 43200 < th dose independent rect. 13 19
637 406.31 temperature 20.0 14400 < th dose independent sin 11 NA
643 406.33 radiation 10.0 43200 < th dose independent rect. 6 2
656 406.36 temperature 20.0 14400 > th dose independent rect. 18 13
678 406.45 temperature 20.0 14400 > th dose independent rect. 22 9
685 406.46 temperature 25.0 4320 > th dose dependent rect. 11 1
733 406.54 radiation 40.0 43200 < th dose independent sin 16 NA
826 406.70 humidity 70.0 43200 < th dose independent rect. 17 1
848 406.74 radiation 10.0 43200 < th dose independent rect. 21 12
913 406.84 temperature 20.0 14400 > th dose independent sin 11 NA
974 406.93 radiation 10.0 43200 < th dose independent sin 10 NA