BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0687200 Os11g0687200|AK070289
(598 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G54780.1 | chr3:20278985-20281429 FORWARD LENGTH=676 92 6e-19
AT1G08050.1 | chr1:2499088-2501311 REVERSE LENGTH=642 89 9e-18
AT5G60710.1 | chr5:24410953-24414849 REVERSE LENGTH=705 83 4e-16
AT2G38970.1 | chr2:16274135-16276651 FORWARD LENGTH=693 81 1e-15
AT4G37890.1 | chr4:17812812-17815031 REVERSE LENGTH=740 52 7e-07
>AT3G54780.1 | chr3:20278985-20281429 FORWARD LENGTH=676
Length = 675
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 137/280 (48%), Gaps = 18/280 (6%)
Query: 38 PIFSKIPRAQTNKDFQVLLRIEA--PPPVDLKGRVPIDLVAVLDVXXXX--MSLEPVKKA 93
P S +P++++ ++F VL+ ++A + R PIDLV VLD+ L +K+A
Sbjct: 206 PEVSAVPQSKSCENFDVLVHLKAVTGDQISQYRRAPIDLVTVLDISGSMGGTKLALLKRA 265
Query: 94 MKFAIRQLSDEDSIAIFG-PPMSREVIPKFMNIHGSRRIAEKKVDELEGRRFAHPARSSL 152
M F I+ L D +++ +R + P R++A + V+ L + L
Sbjct: 266 MGFVIQNLGSSDRLSVIAFSSTARRLFPLTRMSDAGRQLALQAVNSLVANGGTNIV-DGL 324
Query: 153 DEALKMLEEQPASSSVGRAKFIVLVTDITRFSSDMPE------LSKYPVHAFGLGASHDA 206
+ K++E++ +SV A I+L ++++ P+ L + VH+FG G+ HDA
Sbjct: 325 RKGAKVMEDRLERNSV--ASIILLSDGRDTYTTNHPDPSYKVMLPQISVHSFGFGSDHDA 382
Query: 207 AALRLVAQRSQGTYSFXXXXXXXXXXXXXXXXXXXXKSVAAVGARVVLKAASGSGVRIDR 266
+ + V++ S GT+SF SVA RV ++ S VR+
Sbjct: 383 SVMHSVSEVSGGTFSFIESESVIQDALAQCIGGLL--SVAVQELRVEIEGVS-PNVRLSS 439
Query: 267 ISSGGYASSVSQVDGASGEIAIGALYAGEVKTFVVHLDVP 306
I +G Y+S V+ DG SG + +G LYA E + F+V +++P
Sbjct: 440 IKAGSYSSLVTG-DGHSGLVDLGDLYADEERDFLVSINIP 478
>AT1G08050.1 | chr1:2499088-2501311 REVERSE LENGTH=642
Length = 641
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 134/308 (43%), Gaps = 47/308 (15%)
Query: 38 PIFSKIPRAQTNKDFQVLLRIEAPPPVD--LKGRVPIDLVAVLDVXXXX--MSLEPVKKA 93
P S + + + DF VL+ ++A D + R P+DL+ VLDV + +E +K A
Sbjct: 167 PEVSALAKPVSRADFAVLVHLKAEGVSDDARRARAPLDLITVLDVSGSMDGVKMELMKNA 226
Query: 94 MKFAIRQLSDEDSIAIFG-PPMSREVIPKFMNIHGSRRIAEKKVDEL------------- 139
M F I+ L + D +++ M+R + P + ++ A + V+ L
Sbjct: 227 MSFVIQNLGETDRLSVISFSSMARRLFPLRLMSETGKQAAMQAVNSLVADGGTNIAEGLK 286
Query: 140 ------EGRRFAHPARSSLDEALKMLEEQPASSSVGRAKFIVLVTDITRFSSDMPELSKY 193
EGRR+ +P + +L + + + A + L TD + S +P +
Sbjct: 287 IGARVIEGRRWKNPV-----SGMMLLSDGQDNFTFSHAG-VRLRTD---YESLLPSSCRI 337
Query: 194 PVHAFGLGASHDAAALRLVAQRSQGTYSFXXXXXXXXXXXXXXXXXXXXKSVAAVGARVV 253
P+H FG G+ HDA + +++ S GT+SF SV + V
Sbjct: 338 PIHTFGFGSDHDAELMHTISEVSSGTFSFIETETVIQDAFAQCIGGLL--SVVILEQVVE 395
Query: 254 LKAASGSGVRIDRISSGGYASSVSQVDGASGEIAIGALYAGEVKTFVVHLDVPAAPEISP 313
++ G++I I +G Y S ++ D + I +G +YA E + F+V L++P
Sbjct: 396 IECIHEQGLKISSIKAGSYRSRIAP-DARTATIDVGDMYAEEERDFLVLLEIP------- 447
Query: 314 GEGVCCDQ 321
CCD
Sbjct: 448 ----CCDN 451
>AT5G60710.1 | chr5:24410953-24414849 REVERSE LENGTH=705
Length = 704
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 135/304 (44%), Gaps = 38/304 (12%)
Query: 31 TVKVSTTPIFSKIPRAQTNKDFQVLLRIEAPPPVDLKG------RVPIDLVAVLDVXXXX 84
T++V T P S++ R+ + KDF VL+ ++AP R P+DLV VLDV
Sbjct: 204 TLEVKTYPEISEVVRSVSFKDFAVLINLKAPTSSKSSSNPSSSSRAPVDLVTVLDVSGSM 263
Query: 85 --MSLEPVKKAMKFAIRQLSDEDSIAIFG-PPMSREVIPKFMNIHGSRRIAEKKVDEL-- 139
L +K+AM F I+ L D +++ +R P + ++ A + V+ L
Sbjct: 264 AGTKLALLKRAMGFVIQNLGPFDRLSVISFSSTARRNFPLRLMTETGKQEALQAVNSLVS 323
Query: 140 -------EGRRFAHPARSSLDEALKMLEEQPASSSV----GRAKFIVLVTDITR---FSS 185
EG AR +D K P SS V G+ + + + +R + +
Sbjct: 324 NGGTNIAEG--LKKGARVLIDRRFK----NPVSSIVLLSDGQDTYTMTSPNGSRGTDYKA 377
Query: 186 DMPEL---SKYPVHAFGLGASHDAAALRLVAQRSQGTYSFXXXXXXXXXXXXXXXXXXXX 242
+P+ ++ PVHAFG GA HDA+ + +A+ S GT+SF
Sbjct: 378 LLPKEINGNRIPVHAFGFGADHDASLMHSIAENSGGTFSFIESETVIQDAFAQCIGGLLS 437
Query: 243 KSVAAVGARVVLKAASGSGVRIDRISSGGYASSVSQVDGASGEIAIGALYAGEVKTFVVH 302
V + V +RI + +G Y + + +G IA+G LYA E + F+V+
Sbjct: 438 VVVQEL---CVTIECMHHLLRIGSVKAGSYRFD-NGPNSRTGSIAVGDLYAEEERNFLVN 493
Query: 303 LDVP 306
LD+P
Sbjct: 494 LDIP 497
>AT2G38970.1 | chr2:16274135-16276651 FORWARD LENGTH=693
Length = 692
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 147/333 (44%), Gaps = 38/333 (11%)
Query: 3 RLQNLMLLSAGFFSTLLLAQVTSAAAGMTVKVSTTPIFSKIPRAQTNKDFQVLLRIEAPP 62
RL+ ++ S +S L + M +K+ P S +PRA + + F VL+ + A
Sbjct: 176 RLEQQLVFSGKSYSDAL--ENNHPVRMMDLKI--YPEVSAVPRADSREKFDVLVHLRAAA 231
Query: 63 PVDLKG-----------RVPIDLVAVLDVXXXX--MSLEPVKKAMKFAIRQLSDEDSIAI 109
V R P+DLV VLD+ L +K+AM F I+ L D +++
Sbjct: 232 MVTGNANSLNNQISRYPRAPVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGSNDRLSV 291
Query: 110 FG-PPMSREVIPKFMNIHGSRRIAEKKVDELEGRRFAHPARSSLDEALKMLEEQ----PA 164
+R + P R+ A + V+ + + A L + +K++E++ P
Sbjct: 292 IAFSSTARRLFPLTKMSDAGRQRALQAVNSVVANGGTNIAEG-LRKGVKVMEDRRDKNPV 350
Query: 165 SS----SVGRAKFIVLVTD-----ITRFSSDMPELSKY--PVHAFGLGASHDAAALRLVA 213
+S S GR + + D + S E ++ PVH+FG G+ HDA+ + V+
Sbjct: 351 ASIILLSDGRDTYTMNQADPNYKLLLPLSMHGCESKRFQIPVHSFGFGSDHDASLMHSVS 410
Query: 214 QRSQGTYSFXXXXXXXXXXXXXXXXXXXXKSVAAVGARVVLKAASGSGVRIDRISSGGYA 273
+ S GT+SF SVA R+ ++ S V + I +G Y
Sbjct: 411 ETSGGTFSFIESESVIQDALAQCIGGLL--SVAVQELRLEIEGMC-SDVHLSSIKAGSYQ 467
Query: 274 SSVSQVDGASGEIAIGALYAGEVKTFVVHLDVP 306
S VS DG SG + IG LYA E + F++ +++P
Sbjct: 468 SLVSG-DGRSGCVDIGDLYADEERDFLISVNIP 499
>AT4G37890.1 | chr4:17812812-17815031 REVERSE LENGTH=740
Length = 739
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 124/275 (45%), Gaps = 48/275 (17%)
Query: 49 NKDFQVLLRIEAPPPVDLKGRVPIDLVAVLDVXXXXMSLEPVKKAMKFAIRQLSDEDSIA 108
N+ + VL++I++P + R P+DLV V+DV ++E VK+AM+ I L + D ++
Sbjct: 334 NETYSVLMKIKSPS-LPTARRSPVDLVTVIDVSGG--NIEMVKRAMRQVISSLRETDRLS 390
Query: 109 IFGPPMS-REVIP-KFMNIHGSRRIAEKKVDELEGRRFAHPARSSLDEALKMLEEQPASS 166
+ S + + P + M +G RR+A + VD++ G ++ +A K++E++ +
Sbjct: 391 MVSFSSSSKRLTPLRRMTANG-RRLARRIVDDISGDGDGMSVNDAVKKAAKVIEDRRQKN 449
Query: 167 SVGRAKFIVLVTDITRFSSDMPELSK-------------YPVHAFGLGASHDAAALRLVA 213
I ++TD R S+ +L++ P H LGA + A + A
Sbjct: 450 LF---TTIFVLTDRNRNSAHQAQLAQPDFVTSTRFSHLEIPTHTIWLGACNHALPEDVFA 506
Query: 214 QRSQGTYSFXXXXXXXXXXXXXXXXXXXXKSVAAVGARVVLKAASGSGVRIDRISSGGYA 273
+R + S SV + + L + SG G +++S Y+
Sbjct: 507 KRIKSLLSL---------------------SVQDLTLNLGLVSGSGQG----KVTS-VYS 540
Query: 274 SSVSQVDGASGEIAIGALYAGEVKTFVVHLDVPAA 308
S V SG I +G +Y E + +V L P++
Sbjct: 541 LSGRPVWLGSGLIRLGDMYGDEEREVLVELKSPSS 575
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.134 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,016,111
Number of extensions: 421873
Number of successful extensions: 945
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 938
Number of HSP's successfully gapped: 7
Length of query: 598
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 494
Effective length of database: 8,255,305
Effective search space: 4078120670
Effective search space used: 4078120670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)