Os11g0684700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os11g0684700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.48 | 0.353 | 9.92 | 1.58 | 0.432 | 1.43 | 0.323 | -0.469 | 0.209 | 19.8 | 20.1 | 3783 | -- | -- |
| 56.8 | 0.351 | 9.9 | 1.64 | 0.428 | 1.51 | 0.323 | -- | 0.238 | 19.8 | 20.1 | 3800 | -- | -- |
| 56.78 | 0.351 | 9.92 | 1.57 | 0.43 | 1.43 | -- | -0.463 | 0.21 | 19.8 | 20.14 | 3785 | -- | -- |
| 56.44 | 0.35 | 9.89 | 1.8 | 0.433 | 1.39 | -- | -- | 0.278 | 19.6 | 20.3 | 2553 | -- | -- |
| 65.43 | 0.377 | 9.88 | 1.79 | -- | 1.42 | -- | -0.273 | 0.273 | -- | 20.2 | 2221 | -- | -- |
| 98.14 | 0.464 | 9.81 | 2.55 | 0.459 | -- | 0.324 | -- | 0.635 | 20.3 | -- | -- | -- | -- |
| 98.45 | 0.465 | 9.81 | 2.54 | 0.457 | -- | -- | -- | 0.635 | 20.4 | -- | -- | -- | -- |
| 64.53 | 0.374 | 9.88 | 1.92 | -- | 1.29 | -- | -- | 0.252 | -- | 21.35 | 2231 | -- | -- |
| 65.13 | 0.376 | 9.99 | -- | 0.426 | 2.42 | -- | -- | -0.147 | 20.2 | 17.4 | 47520 | -- | -- |
| 110.11 | 0.49 | 9.79 | 2.54 | -- | -- | -- | -- | 0.63 | -- | -- | -- | -- | -- |
| 268.49 | 0.766 | 9.87 | -- | 0.449 | -- | -- | -- | 0.352 | 20.8 | -- | -- | -- | -- |
| 75.98 | 0.406 | 9.98 | -- | -- | 2.38 | -- | -- | -0.171 | -- | 17.85 | 47520 | -- | -- |
| 279.96 | 0.781 | 9.86 | -- | -- | -- | -- | -- | 0.349 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.33 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 2 | 53.60 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 13 | 54.20 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 16 |
| 16 | 54.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 14 |
| 27 | 54.52 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 35 | 54.62 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 64 | 54.98 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 8 |
| 111 | 55.21 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 116 | 55.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 133 | 55.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 145 | 55.33 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 151 | 55.36 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 201 | 55.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 10 |
| 210 | 55.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 10 |
| 288 | 55.86 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 379 | 56.26 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 489 | 56.68 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 512 | 56.76 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 11 |
| 530 | 56.81 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 615 | 57.13 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 626 | 57.17 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 636 | 57.22 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 9 |
| 663 | 57.31 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 667 | 57.32 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 749 | 57.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 755 | 57.57 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 771 | 57.61 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 17 |
| 825 | 57.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 855 | 57.86 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 17 |
| 879 | 57.91 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 892 | 57.93 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 907 | 57.96 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 978 | 58.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |